View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17305_high_10 (Length: 307)
Name: NF17305_high_10
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 5066999 - 5066710
Alignment:
| Q |
1 |
tcatcaaagtgtgaatatgagaaactaatgttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaaata |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5066999 |
tcatgaaagtgtgaatatgagaaactaatgttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaaata |
5066900 |
T |
|
| Q |
101 |
ttcattcatgtactttttggtaatttaccctattggttatgattgtaaca-nnnnnnnnggtatcactttttgtgtatggcaggtatgggaattttttca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5066899 |
ttcattcatgtactttttggtaatttaccctattggttatgattgtaacatttttttttggtatcactttttgtgtatggcaggtatgggaattttttca |
5066800 |
T |
|
| Q |
200 |
aatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5066799 |
aatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttc |
5066710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 975683 - 975578
Alignment:
| Q |
176 |
atggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagc |
275 |
Q |
| |
|
||||||||| ||| | |||||||||||| |||||| | || ||||||||||||| |||||||||||||| || ||||||||||||||| |||||||| | |
|
|
| T |
975683 |
atggcaggtttggaagttttttcaaatcacacatacttggcagtcctacaattgtttcaatggatccagagcttaatagatacatattgttgaatgaatc |
975584 |
T |
|
| Q |
276 |
aaaagg |
281 |
Q |
| |
|
|||||| |
|
|
| T |
975583 |
aaaagg |
975578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 5591025 - 5590913
Alignment:
| Q |
169 |
tttgtgtatggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatga |
268 |
Q |
| |
|
|||||| ||||||||| ||| | |||||||||||| || ||| | || || |||||||| || |||||||||||||| || |||||||||||||| |||| |
|
|
| T |
5591025 |
tttgtgaatggcaggtttggaagttttttcaaatcacatatacttggctgccctacaatagtttcaatggatccagagcttaatagatacatattaatga |
5590926 |
T |
|
| Q |
269 |
atgaagcaaaagg |
281 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
5590925 |
atgaatcaaaagg |
5590913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University