View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_high_12 (Length: 292)
Name: NF17305_high_12
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 29392423 - 29392173
Alignment:
| Q |
20 |
aagcggaagtgaaaagtttgtatcaatatcacaacaacccaaaaaacaatattcacatttcctcaaccaaacgagacgtctttttataaaagaaaaaact |
119 |
Q |
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| T |
29392423 |
aagcggaagtgaaa-gtttgtatcagtatcactacaacccaaaaaacaacatttatatttcctcaaccaaacgagacgtctttttataaaagaaaaaact |
29392325 |
T |
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| Q |
120 |
gtgaagggtcacacaagatttaaaatgaactacagtgcatcgaaaaatgcaatgtcacagacttgatgtccgaataatttatcaataaaagtataaaatt |
219 |
Q |
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| T |
29392324 |
gcgaagggtcacacaaggtttaaaatagactacaatgcatcgaaaaatacaatgtc--------gatgtccgaataatttatcaataaaaatataaaatt |
29392233 |
T |
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| Q |
220 |
gtaaaatcatattcagcctaaagttattatgtccttatccaaaaattaagataatgagta |
279 |
Q |
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| T |
29392232 |
gtaaaatcatattcagcctaaagttattatgtccttatccaaaaattaagataatgagta |
29392173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 20703588 - 20703634
Alignment:
| Q |
89 |
aacgagacgtctttttataaaagaaaaaactgtgaagggtcacacaag |
136 |
Q |
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| T |
20703588 |
aacgagacgtctttt-ataaaagaaaaaattgtgaaggctcacacaag |
20703634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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