View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_high_15 (Length: 247)
Name: NF17305_high_15
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 4033347 - 4033124
Alignment:
| Q |
18 |
acactatcttttaataaagtgccaccatacttttcatcgatgtcttataagatcaaactgtaaattaaactgcctttaatcattataaatttaattttcg |
117 |
Q |
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| T |
4033347 |
acactatcttttaataaagtgccaccatacttttcatcgatgtcttataagatcaaactgcaaattatactgcctttaatcattataaatttaattttct |
4033248 |
T |
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| Q |
118 |
gtagttttttaagcctgctgatggtattgttaaagttaaagtatcccatttctgagaacgatcatagaatcaattga-ggaaatgttactcaatacctct |
216 |
Q |
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| T |
4033247 |
gtagttttttaagcctgctgatggtattgttaaagttaaagtatcccaatccagagaatgatcatagaatc-attgagggaaatgttaatcaatgcctct |
4033149 |
T |
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| Q |
217 |
ggggcattagttaaggtctttaaat |
241 |
Q |
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| T |
4033148 |
gaagcattaattaagtcctttaaat |
4033124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 13954007 - 13954056
Alignment:
| Q |
18 |
acactatcttttaataaagtgccaccatacttttcatcgatgtcttataa |
67 |
Q |
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| T |
13954007 |
acactatcttttaataaagtgccaccatacttttcatcgatgtcttataa |
13954056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 13954092 - 13954149
Alignment:
| Q |
190 |
attgaggaaatgttactcaatacctctggggcattagttaaggtctttaaataaaaat |
247 |
Q |
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| T |
13954092 |
attgaggaaatgatactcattacctctggagcattagttaaggcctttaaatgaaaat |
13954149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 13954054 - 13954089
Alignment:
| Q |
94 |
taatcattataaatttaattttcggtagttttttaa |
129 |
Q |
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| T |
13954054 |
taatcattataaatttaattttcggtagttttttaa |
13954089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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