View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17305_high_2 (Length: 488)

Name: NF17305_high_2
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17305_high_2
NF17305_high_2
[»] chr5 (17 HSPs)
chr5 (19-470)||(8528583-8529050)
chr5 (198-470)||(8535333-8535608)
chr5 (84-419)||(9074773-9075109)
chr5 (198-432)||(8677637-8677871)
chr5 (198-419)||(1600336-1600554)
chr5 (198-433)||(8644044-8644279)
chr5 (200-433)||(8636701-8636934)
chr5 (81-190)||(8535183-8535294)
chr5 (198-417)||(8548146-8548365)
chr5 (37-190)||(8548409-8548562)
chr5 (234-289)||(8641242-8641297)
chr5 (358-436)||(8641357-8641435)
chr5 (305-349)||(2856974-2857018)
chr5 (305-349)||(2874584-2874628)
chr5 (201-289)||(9003305-9003393)
chr5 (117-186)||(1600601-1600670)
chr5 (305-349)||(2845147-2845191)
[»] chr4 (1 HSPs)
chr4 (19-470)||(9442744-9443211)
[»] chr7 (2 HSPs)
chr7 (198-419)||(48361902-48362128)
chr7 (223-390)||(35779694-35779861)
[»] chr1 (1 HSPs)
chr1 (198-419)||(5130638-5130860)
[»] scaffold0627 (1 HSPs)
scaffold0627 (198-293)||(4492-4587)
[»] chr6 (2 HSPs)
chr6 (198-291)||(16716179-16716272)
chr6 (306-412)||(16716299-16716405)


Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 8528583 - 8529050
Alignment:
Q  19 atatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528583 atatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 8528682  T
Q  119 gtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||    
T  8528683 gtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagattcaattgccaataaaaataaaattttacc 8528782  T
Q  203 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528783 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccg 8528882  T
Q  303 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttca 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528883 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttca 8528982  T
Q  403 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528983 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 8529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 198 - 470
Target Start/End: Original strand, 8535333 - 8535608
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8535333 ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt 8535432  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 397  Q
       | |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  8535433 gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcacctt 8535532  T
Q  398 cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatc 470  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||||||   ||| |||||||||| ||||||||    
T  8535533 cttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatc 8535608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 84 - 419
Target Start/End: Complemental strand, 9075109 - 9074773
Alignment:
Q  84 ttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaacc 182  Q
    |||||||||||||| ||||||| |||||| || | |||||||||||| ||||  || ||||||| ||| ||||||||||||||||| ||||  || ||      
T  9075109 ttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatgacttgtacggaaa-ataaagt 9075011  T
Q  183 atcagatttaaaatt-ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggat 281  Q
    || |||    | ||| ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9075010 attagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggat 9074911  T
Q  282 tacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgac 381  Q
    |||||||||| | |||    |||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| ||    
T  9074910 tacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataac 9074811  T
Q  382 aatatggcagcaccttcttcaaagtgttttatcggcca 419  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9074810 aatatggcagcaccttcttcaaagtgttttatcggcca 9074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 198 - 432
Target Start/End: Original strand, 8677637 - 8677871
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
T  8677637 ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8677735  T
Q  298 atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 396  Q
        ||  | || |||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||||||     
T  8677736 ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccc 8677835  T
Q  397 tcttcaaagtgttttatcggccagcttaaaccataa 432  Q
    |||||||||||||||| |||||| | ||||||||||    
T  8677836 tcttcaaagtgttttaccggccaacataaaccataa 8677871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 198 - 419
Target Start/End: Complemental strand, 1600554 - 1600336
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |    
T  1600554 ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct 1600455  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 397  Q
       |||||||||||||||  |||| ||||| | | ||||||  ||||||| || ||| | ||||||||   | ||| |||| ||||||||||||||||||    
T  1600454 gaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt 1600358  T
Q  398 cttcaaagtgttttatcggcca 419  Q
    |||||||||||| |||||||||    
T  1600357 cttcaaagtgttgtatcggcca 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 198 - 433
Target Start/End: Original strand, 8644044 - 8644279
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
T  8644044 ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8644142  T
Q  298 atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 396  Q
        ||  | || ||||||||||||||||||||  ||| ||| |  ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| ||     
T  8644143 ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccc 8644242  T
Q  397 tcttcaaagtgttttatcggccagcttaaaccataac 433  Q
    |||||||||| ||||| |||||| | |||||||||||    
T  8644243 tcttcaaagttttttaccggccaacataaaccataac 8644279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 200 - 433
Target Start/End: Original strand, 8636701 - 8636934
Alignment:
Q  200 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat 299  Q
    ||||||||||||||||||| ||||| |||||| |||||||||  |||||||||||||| |||||||||||||  ||||| |||| ||||| | | |        
T  8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga 8636800  T
Q  300 ccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttct 399  Q
       | | || ||||||| |||||||||||| |||  ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||    
T  8636801 agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctct 8636900  T
Q  400 tcaaagtgttttatcggccagcttaaaccataac 433  Q
    ||||||||||||| |||||| | || ||||||||    
T  8636901 tcaaagtgttttaccggccatcatataccataac 8636934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 8535183 - 8535294
Alignment:
Q  81 agtttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatc 178  Q
    |||||||||||||| || |||||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||| |||||||| ||||||    
T  8535183 agtttaaaatataactggtaacataggaaacttacagaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatc 8535282  T
Q  179 aaccatcagatt 190  Q
    ||||||||||||    
T  8535283 aaccatcagatt 8535294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 198 - 417
Target Start/End: Complemental strand, 8548365 - 8548146
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||||||| ||| | |||||||||||  | | |    
T  8548365 ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattgt 8548266  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 397  Q
         |   ||||||||||||||| ||||||  |||||||| || || |  ||||| ||||||||||   | ||||||||| |||||| ||||||||| |    
T  8548265 gaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccct 8548166  T
Q  398 cttcaaagtgttttatcggc 417  Q
    ||||||||||||||| ||||    
T  8548165 cttcaaagtgttttaccggc 8548146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 8548562 - 8548409
Alignment:
Q  37 taacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcg 135  Q
    |||||||| | |||| ||| ||||||| |||||  ||||||| ||||||||| ||||||  |||||| |  ||| | ||||| | ||||||||||||||     
T  8548562 taacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactca 8548464  T
Q  136 actcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt 190  Q
     || ||||||| ||| ||||||||||| || || || ||||||||||||||||||    
T  8548463 tcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagatt 8548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
Q  234 tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 289  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||| ||||||||||    
T  8641242 tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 8641357 - 8641435
Alignment:
Q  358 aaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacccc 436  Q
    ||||||||| ||||||||||| || |||  |||||||| |||||||||||| ||| |||||| | || |||||||||||    
T  8641357 aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataacccc 8641435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
Q  305 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 349  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
T  2857018 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2856974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
Q  305 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 349  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
T  2874628 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2874584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
Q  201 ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 289  Q
    |||||||| || |||||  ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| ||||||||||    
T  9003305 ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 1600670 - 1600601
Alignment:
Q  117 aagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatca 186  Q
    ||||||||||||| ||| | || ||||||| ||| ||||||||||||||||| || | |||| |||||||    
T  1600670 aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatca 1600601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
Q  305 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 349  Q
    |||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  2845191 tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt 2845147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 9442744 - 9443211
Alignment:
Q  19 atatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 118  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9442744 atatcaaccgaagtaacctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 9442843  T
Q  119 gtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttacc 202  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||                ||||||||||||    
T  9442844 gtccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatcaaccatcagattcaattgccaataaaaataaaattttacc 9442943  T
Q  203 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  9442944 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataatttttccg 9443043  T
Q  303 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttca 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9443044 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttca 9443143  T
Q  403 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443144 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 9443211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 198 - 419
Target Start/End: Complemental strand, 48362128 - 48361902
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaatta-----gacttggaatgtgtgggattacttcaaaat 292  Q
    |||||||||||||| |||||  ||||| |||||  |||||||||| |||||||||||||||||||     |||||||||| ||||||||||||||||||     
T  48362128 ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaag 48362029  T
Q  293 aatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagc 392  Q
    ||  |   |||||||| |||||  ||||| ||||| | | |||||| |||||||| || ||| | ||||  | | ||||||||||| |||||||||||||    
T  48362028 aacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagc 48361929  T
Q  393 accttcttcaaagtgttttatcggcca 419  Q
    |||||||||||||||||||||||||||    
T  48361928 accttcttcaaagtgttttatcggcca 48361902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 223 - 390
Target Start/End: Original strand, 35779694 - 35779861
Alignment:
Q  223 tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa 322  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | |||   ||| ||||| ||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
Q  323 ctttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggca 390  Q
    ||||| | |||||||| ||||||||  ||||| ||||||||||| | ||||||||| |||||||||||    
T  35779794 ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca 35779861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 198 - 419
Target Start/End: Original strand, 5130638 - 5130860
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| ||||||||||  |  |||    
T  5130638 ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt 5130737  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct 396  Q
       | | ||||||||||||||||||||||| | | |||||| || ||||| | || ||  |||||| ||| |||||||||||  |||||||||||||||     
T  5130738 gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc 5130837  T
Q  397 tcttcaaagtgttttatcggcca 419  Q
    |||||||||||||||| ||||||    
T  5130838 tcttcaaagtgttttaccggcca 5130860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 4492 - 4587
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 293  Q
    ||||||||||||||||||||  |||||||||||| |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  4492 ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata 4587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 16716179 - 16716272
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaa 291  Q
    ||||||||||||||||||||  |||||||||||  |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  16716179 ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaa 16716272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 16716299 - 16716405
Alignment:
Q  306 cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaag 405  Q
    ||||||||||||||||   ||||  |||||||| | ||| || ||||| ||||||||||     ||||||||| |||||| | ||||||| |||||||||    
T  16716299 cccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaatacgccagcaccctcttcaaag 16716398  T
Q  406 tgtttta 412  Q
    |||||||    
T  16716399 tgtttta 16716405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University