View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17305_high_4 (Length: 388)
Name: NF17305_high_4
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_high_4 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 4668828 - 4669202
Alignment:
| Q |
14 |
agaacacaatcaatctatatagtccacgcaccaaatcatttgcgccttatttgcctctcgatacacatgataaatatgaactcgttaatcttcctagagt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4668828 |
agaacacaatcaatctatatagtccacgcaccaaatcatttgcgccttatttgcctctcgatacacatgataaatatgaacacgttaatcttcctagagt |
4668927 |
T |
|
| Q |
114 |
ccaaattaattagtagtaataattaatgcatcaatggaagcgtgatcttgtaataaaaatgaattcgtttaaatgtagtggcttagagttgataacatag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4668928 |
ccaaattaattagtagtaataattaatgcatcaatggaagcgtgatcttgtaataaaaatgaattcgtttaaatgtagtggcttagagttgataacatag |
4669027 |
T |
|
| Q |
214 |
tggtgcaatggagaaacaaatgaaaagggtcatgattaatcgtgatatgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagtt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4669028 |
tggtgcaatggagaaacaaatgaaaagggtcatgattaatcttgatatgtatcatcctctccggtttgaatagaactcaccctcgaatataaatctagtt |
4669127 |
T |
|
| Q |
314 |
catcatccctatatgatgaaatatcgacaacattgaaggctgctgagacatcataggtattcgacatttatgcct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4669128 |
catcatccctatatgatgaaatatcgacaacattgaaggctgctgagacatcataggtattcgacatttatgcct |
4669202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 2790867 - 2790977
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
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|||||||| |||||||| ||||| ||||||| ||||||| | | |||| |||| |||||| ||||| ||||| |||| |||||||||||| ||||||| |
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| T |
2790867 |
tgtatcatcctctccgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
2790966 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
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||| ||||||| |
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|
| T |
2790967 |
acaccataggt |
2790977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 371
Target Start/End: Original strand, 14471852 - 14471959
Alignment:
| Q |
264 |
atcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgagaca |
363 |
Q |
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||||||||| |||| |||| |||||||| |||||| | || |||||||||||||||| ||||| || || ||| |||||||||||| |||||||||| |
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| T |
14471852 |
atcattctccccgggttgagtagaactcgtcctcgagtttatatctagttcatcatccagatatggtgtaaggtcggcaacattgaaggttgctgagaca |
14471951 |
T |
|
| Q |
364 |
tcataggt |
371 |
Q |
| |
|
||||||| |
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|
| T |
14471952 |
ccataggt |
14471959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 11674754 - 11674794
Alignment:
| Q |
124 |
tagtagtaataattaatgcatcaatggaagcgtgatcttgt |
164 |
Q |
| |
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|||||||||||||| |||||||||||||| | ||||||||| |
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| T |
11674754 |
tagtagtaataattgatgcatcaatggaaacatgatcttgt |
11674794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 11682227 - 11682255
Alignment:
| Q |
124 |
tagtagtaataattaatgcatcaatggaa |
152 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11682227 |
tagtagtaataattaatgcatcaatggaa |
11682255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 371
Target Start/End: Original strand, 5378323 - 5378430
Alignment:
| Q |
264 |
atcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgagaca |
363 |
Q |
| |
|
||||||||| || | |||| |||||||| |||||| | || |||||||||||||||| ||||| ||||| ||| |||||||||||| |||||||||| |
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| T |
5378323 |
atcattctcccccggttgagtagaactcgtcctcgagtttatatctagttcatcatccagatatggtgaaaggtcggcaacattgaaggttgctgagaca |
5378422 |
T |
|
| Q |
364 |
tcataggt |
371 |
Q |
| |
|
||||||| |
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|
| T |
5378423 |
ccataggt |
5378430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 13719447 - 13719557
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||| | |||||||| ||||| |||||| ||||||| | | |||| |||| |||||| ||||| ||||| ||||||||||||||||| ||||||| |
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| T |
13719447 |
tgtatcttcctctccgggttgaacagaacttgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcgacaacattgaaggttgctgag |
13719546 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
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|
| T |
13719547 |
acaccataggt |
13719557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 91587 - 91477
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||||| ||| |||| ||||| ||||||| ||||||| | | |||| |||| |||||| ||||| ||||| |||| |||||||||||| ||||||| |
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| T |
91587 |
tgtatcatcctccccggattgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
91488 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
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| T |
91487 |
acaccataggt |
91477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 16772758 - 16772868
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||||| ||| || | ||||| ||||||| ||||||| | | |||| ||||||||||| ||||| ||||| |||| |||||||||||| ||||||| |
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|
| T |
16772758 |
tgtatcatcctccccaggttgaacagaactcgccctcgagttcatatctggttcatcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
16772857 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
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|
| T |
16772858 |
acaccataggt |
16772868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 32708012 - 32707902
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||||| ||| |||| ||||| ||||||| ||||||| | | |||| |||| |||||| ||||| ||||| |||| |||||||||||| ||||||| |
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|
| T |
32708012 |
tgtatcatcctccccgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
32707913 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
|
|
| T |
32707912 |
acaccataggt |
32707902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 12842734 - 12842624
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||||| ||| |||| ||||| ||||||| ||||||| | | |||| |||| |||||| ||||| ||||| |||| |||||||||||| ||||||| |
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|
| T |
12842734 |
tgtatcatcctccccgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
12842635 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
|
|
| T |
12842634 |
acaccataggt |
12842624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 24503 - 24613
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||||| ||| | || ||||| ||||||| ||||||| | | |||| |||| |||||| ||||| ||||| |||| |||||||||||| ||||||| |
|
|
| T |
24503 |
tgtatcatcctccctgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
24602 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
|
|
| T |
24603 |
acaccataggt |
24613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 11716390 - 11716280
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||||| ||| | || ||||| ||||||| ||||||| | | |||| |||| |||||| ||||| ||||| |||| |||||||||||| ||||||| |
|
|
| T |
11716390 |
tgtatcatcctccctgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
11716291 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
|
|
| T |
11716290 |
acaccataggt |
11716280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 14026814 - 14026704
Alignment:
| Q |
261 |
tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag |
360 |
Q |
| |
|
|||||||| ||| |||| ||||| | ||||| ||||||| | | || | |||| |||||| ||||| ||||| |||| |||||||||||| ||||||| |
|
|
| T |
14026814 |
tgtatcatcctccccgggttgaacaaaactcgccctcgagttcatatatggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag |
14026715 |
T |
|
| Q |
361 |
acatcataggt |
371 |
Q |
| |
|
||| ||||||| |
|
|
| T |
14026714 |
acaccataggt |
14026704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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