View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_high_7 (Length: 359)
Name: NF17305_high_7
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 57 - 345
Target Start/End: Complemental strand, 49183895 - 49183596
Alignment:
| Q |
57 |
tcattaatgatacaatgatattgtaaaatgacttataaataaaaca--aatactttttctcaaagtgacatataataaaatacataaaagactgcaaata |
154 |
Q |
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| T |
49183895 |
tcattaatgatacaatgatattgtaaagtgatttataaataaaacacaaatactttttctcaaagtgacatataataaaatacataaaagactgcaaata |
49183796 |
T |
|
| Q |
155 |
gtttttgtcaaaagaaactcatctag--------atattaattaatgtaaagaacaaatccattggtacatgnnnnnnnnnagagaaattaaaatgtatt |
246 |
Q |
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| T |
49183795 |
gtttttgtcaaaagaaactcatctagtcatctagatattaattaatgtaaagaacaaatcgattggtacatgtttttttttagagaaattaaaatgtatt |
49183696 |
T |
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| Q |
247 |
ggtacatgttgaattgttaattgcatggtagaaaatt-tctatcattattattattatttcatacgtttgtttttggttcgccacgttgtggatgctaac |
345 |
Q |
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| T |
49183695 |
ggtacatgttgaattgttaattgtatggtagaaaattctctatcattattattattatttcatacgtttgtttttggttcgccacgttgtggatgctaac |
49183596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49183952 - 49183911
Alignment:
| Q |
1 |
agagtagaaataagagagggtgataaatgataaatggtattt |
42 |
Q |
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| T |
49183952 |
agagtagaaataaaagagggtaataaatgataaatggtattt |
49183911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 31956202 - 31956121
Alignment:
| Q |
57 |
tcattaatgatacaatgatattgtaaaatgacttataaataaaacaaatac-tttttctcaaagtgacatataataaaataca |
138 |
Q |
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||||||||||| ||||||||||| |||| ||||||| |||||||| | || ||||| ||||||||| |||||||||||||| |
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| T |
31956202 |
tcattaatgatgcaatgatattgcaaaacgacttat-aataaaactgaaacatttttttcaaagtgatttataataaaataca |
31956121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 5374569 - 5374533
Alignment:
| Q |
58 |
cattaatgatacaatgatattgtaaaatgacttataa |
94 |
Q |
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|||||||||| |||||||||||||||||||| ||||| |
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| T |
5374569 |
cattaatgattcaatgatattgtaaaatgacatataa |
5374533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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