View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17305_high_9 (Length: 327)

Name: NF17305_high_9
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17305_high_9
NF17305_high_9
[»] chr1 (3 HSPs)
chr1 (12-312)||(31432639-31432939)
chr1 (111-312)||(33377907-33378118)
chr1 (111-293)||(31439327-31439517)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 31432639 - 31432939
Alignment:
Q  12 atgaacattaattctcttattatatattatatctcttttatttacactgcacttttattccatctacacagtttagcagcctaattcttttaatatcggc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31432639 atgaacattaattctcttattatatattatatctcttttatttacattgcacttttattccatctacacagtttagcagcctaattcttttaatatcagc 31432738  T
Q  112 atcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgcaaggtccttttcacttctcgaaataag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31432739 atcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgtaaggtccttttcacttctcgaaataag 31432838  T
Q  212 gcgtatatcttcaaaatcattgcaacttcttgctagttagacatcaaatatttctcttattttaattcaagtttttcattctatcaacataatatgatgt 311  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  31432839 gtgtatatcttcaaaatcattgcaacttcttgctagttagacatcaaatattcctcttattttaattcaagttttttattctaccaacataatatgatgt 31432938  T
Q  312 g 312  Q
    |    
T  31432939 g 31432939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 111 - 312
Target Start/End: Complemental strand, 33378118 - 33377907
Alignment:
Q  111 catcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgcaaggtccttttcacttctcgaaataa 210  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||| | ||||| || |||||| |||    
T  33378118 catcttatgatgttgttacttgttgctcaagattctcagatcagatttaaccatgacatgtgaaaagataatgtaaggactttttcgctgctcgaagtaa 33378019  T
Q  211 ggcg----------tatatcttcaaaatcattgcaacttcttgctagttagacatcaaatatttctcttattttaattcaagtttttcattctatcaaca 300  Q
    ||||          | |||||||| ||| |||||||||||||| |||||||| |||||||||| |||||||||  | ||||||||||||||||  |||||    
T  33378018 ggcggatacatctttgtatcttcataataattgcaacttcttgttagttagatatcaaatattcctcttatttcgaatcaagtttttcattctgccaaca 33377919  T
Q  301 taatatgatgtg 312  Q
    ||||| ||||||    
T  33377918 taatacgatgtg 33377907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 293
Target Start/End: Original strand, 31439327 - 31439517
Alignment:
Q  111 catcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgcaaggtccttttcacttctcgaaataa 210  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||||||||||||||| || ||||||| || || ||| |||||||| ||||||||||    
T  31439327 catcttgtgatgttgttacttgttgctcaaggttc--agatcagatttaaccatgacatatgaaaagataatgtaaagtctttttcactactcgaaataa 31439424  T
Q  211 ggcgta----------tatcttcaaaatcattgcaacttcttgctagttagacatcaaatatttctcttattttaattcaagtttttcattct 293  Q
    ||||||          ||||||   ||||||||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  31439425 ggcgtatacatcttcgtatctttgtaatcattgcaacttctttctagttagacatcaaatattcctcttactttaaatcaagtttttcattct 31439517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University