View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17305_low_1 (Length: 751)

Name: NF17305_low_1
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17305_low_1
NF17305_low_1
[»] chr4 (1 HSPs)
chr4 (15-734)||(35409716-35410434)


Alignment Details
Target: chr4 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 15 - 734
Target Start/End: Original strand, 35409716 - 35410434
Alignment:
Q  15 tcattaggaattaattttcgcattaattgtggccggattggaacatatccaccataggggtattgactgaagttcaagacagcatgttgcgctgatacag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35409716 tcattaggaattaattttcgcattaattgtggccggattggaacatatccaccataggggtattgactgaagttcaagacagcatgttgcgctgatacag 35409815  T
Q  115 tccagataatggtggtaagcaaggagatgagatcctcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35409816 tccagataatggtggtaagcaaggagatgagatcctcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaa 35409915  T
Q  215 ttctttgtaccaggactggagttcattgtcagaagaaacggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagtc 314  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35409916 ttctttgtaccaggactggagttcattgtcagaagaaatggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagac 35410015  T
Q  315 catatgaggagtccatcagccgcataaggataatcttcaataagtggtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnn 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||           
T  35410016 catatgaggagtccatcagccgcataaggataatcttcaataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctg-aaaaaa 35410114  T
Q  415 ngaaagaataaatagttagatcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgcacagaaaactttgatgaag 514  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  35410115 agaaagaataaatagttagatcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgagcagaaaactttgatgaag 35410214  T
Q  515 gaaactatcttctttaccttcttttaagatcggcaggaagaccttccatgtcaaatcgccaccaatctttataggcagcacacgtaatttgcatacagta 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35410215 gaaactatcttctttaccttcttttaagatcggcaggaagaccttccatgtcaaaccgccaccaatctttataggcagcacacgtaatttgcatacagta 35410314  T
Q  615 tctcccgggagtgtagtttttctctatggaaccgtctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgc 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410315 tctcccgggagtgtagtttttctctatggaaccgtctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgc 35410414  T
Q  715 agaagcttgaatacaggatg 734  Q
    ||||||||||||||||||||    
T  35410415 agaagcttgaatacaggatg 35410434  T

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