View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_low_10 (Length: 330)
Name: NF17305_low_10
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 37 - 311
Target Start/End: Complemental strand, 47372178 - 47371903
Alignment:
| Q |
37 |
tctaaaatataaaccttttcagcaagtgagtgcaaataaa-gtatcatacacgaataaaggttggtcagaaaatcaaccaactctagtttctagataaat |
135 |
Q |
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| T |
47372178 |
tctaaaatataaaccttttcagcaagtgagcgcaaataaaagtatcatacacgaataaaggttggtcagaaaatcaaccaactctagtttctagataaat |
47372079 |
T |
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| Q |
136 |
ttcaacttactttaaatttgtaatatatcatggaaataacaagtcataataattttttcataaacaaagtaagtaattgactatacattcaaaatgacat |
235 |
Q |
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| T |
47372078 |
ttcaacttactttaaatttgtaatatatcatggaaataacaagtcataaattttttttcataaacaaagtaagtaattgactatacattcaaaatgacat |
47371979 |
T |
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| Q |
236 |
atacattcttattttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaac |
311 |
Q |
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| T |
47371978 |
atacattcttattttaccaagttggtgagcttccttcaatgaaaatttcaaaactctcttggcacgcatagtaaac |
47371903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 47814793 - 47814730
Alignment:
| Q |
248 |
tttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaac |
311 |
Q |
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| T |
47814793 |
tttaccaagttggcgagcttcctccaatgagagttccaaaactctcttggcacgcggagtaaac |
47814730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 47379246 - 47379184
Alignment:
| Q |
249 |
ttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaac |
311 |
Q |
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| T |
47379246 |
ttaccaagttggcgagcttcctccaatgagagttccaaaactctcttggcacgcggagtaaac |
47379184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 40242339 - 40242276
Alignment:
| Q |
248 |
tttaccaagttggtgagcttccttcaaagaaaatttcaaaactctcttggcacgcagagtaaac |
311 |
Q |
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| T |
40242339 |
tttaccaagttgacgagcttcctccaatgagagttccaaaactctcttggcacgcggagtaaac |
40242276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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