View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_low_12 (Length: 313)
Name: NF17305_low_12
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 32566414 - 32566128
Alignment:
| Q |
17 |
aaaatctaacaatgaagtggagaaaatatatataaataatcaatcattattgagattttgacacgggttctttgtaagattt-gtattctttcatgttca |
115 |
Q |
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| T |
32566414 |
aaaatctaacaatgaagtggagaaaatctatataaataatcaatcattatcgagattttgacacgagttctttgtaagattttgtattctttcatgttca |
32566315 |
T |
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| Q |
116 |
aattatttttcaaaaaccaagtacactttttcattgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32566314 |
aattatttttcaaaaaccaagtacactttttcattgcgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagagcatcctc |
32566215 |
T |
|
| Q |
216 |
gagggtccaagagagtacaatatctataagactcccgagtttaagattctcttcacctccatttctagtcttctccatcctttgcta |
302 |
Q |
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| T |
32566214 |
gagggtccaagagagtacaatatctataagactcccgagtttaagattctcttcacttccatttctagtcttctccatcctttgcta |
32566128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 32648017 - 32648253
Alignment:
| Q |
22 |
ctaacaatgaagtggagaaaatatatataaataatcaatcattattgagattttgacacgggttctttgtaaga-------tttgtattctttcatgttc |
114 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||| | |||||| |||||||||||| |
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| T |
32648017 |
ctaacaatgaagtggagaaaatctatataaacaatcaatcattattgagattttaacaccatttctttgtaacacaatgaatttgtactctttcatgttc |
32648116 |
T |
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| Q |
115 |
aaattatttttcaaaaaccaagtacactttttcattgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcct |
214 |
Q |
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| T |
32648117 |
aaattctttttcaaaaaccaagttcactttttcattgtgagtattgaaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcct |
32648216 |
T |
|
| Q |
215 |
cgagggtccaagagagtacaatatctataagactccc |
251 |
Q |
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| T |
32648217 |
cgagggtccaagaaagtacaatatctataagactccc |
32648253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 32527666 - 32527763
Alignment:
| Q |
143 |
ttttcattgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatcta |
241 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |
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| T |
32527666 |
ttttcattgtgagtgttcaaaagg-tgtaaatgaaaccttgtgtttgtaaagattttcgttgagaacatcctcgaggggccatgagagtacaatatcta |
32527763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 32534001 - 32534064
Alignment:
| Q |
172 |
aaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaa |
235 |
Q |
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||||||||||||||||||||||||||||| || | |||||||||| |||||| |||||||||| |
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| T |
32534001 |
aaagaaaccttgtctttgtaaagattttcgttcaaaacatcctcgtaggtccatgagagtacaa |
32534064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 32516951 - 32517016
Alignment:
| Q |
177 |
aaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatctat |
242 |
Q |
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||||| || |||| |||||||||||||||||| |||||| || |||||||||| |||||||||||| |
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| T |
32516951 |
aacctggtatttgaaaagattttcattgagaatatcctctagagtccaagagaatacaatatctat |
32517016 |
T |
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