View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_low_16 (Length: 286)
Name: NF17305_low_16
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 820777 - 821041
Alignment:
| Q |
8 |
tcaactgatgatgcttctagacgcatgtccagttctagaagatcttcaactatctaatataataaacttgggaagttacactcgtgattattttgatgac |
107 |
Q |
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| T |
820777 |
tcaactgatgatgcttctagacgcatgtccagttctagaagatcttcaactatctaatataataaacttggaaagttacactcgtgattattttgatgac |
820876 |
T |
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| Q |
108 |
tttgaaagcagctcaatgttaagaaagttgaacagagcagatattaccgcttgtaattggtatttctacgcatacaactatccaaggtttgttttatttt |
207 |
Q |
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| T |
820877 |
tttgaaagcagctcaatgttaagaaagttgaacagagcagatattaccgcttgtaattggtatttctacgcatacaactatccaaggtttgttttatttt |
820976 |
T |
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| Q |
208 |
cggatggagtgaatnnnnnnnncaaagtgattcatttgta-ttttttattttgtacctaatactt |
271 |
Q |
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| T |
820977 |
cggatggagtgaataaaaaaaacaaagtgattcatttgtatttttttattttgtacctaatactt |
821041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 965904 - 965765
Alignment:
| Q |
17 |
gatgcttctagacgcatgtccagttctagaagatcttcaactatctaatataataaacttgggaagttacactcgtgattattttgatgactttgaaagc |
116 |
Q |
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| T |
965904 |
gatgcttgtagatggatgtccagttcttgaagaccttcaactatctaacataaacttcttcatatgttacactcatcattcttttgatgactttgaaaac |
965805 |
T |
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| Q |
117 |
agctcaatgttaagaaagttgaacagagcagatattaccg |
156 |
Q |
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| T |
965804 |
agctcaatgctaagaaagttgaacagagcagatattaccg |
965765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 975172 - 975036
Alignment:
| Q |
15 |
atgatgcttctagacgcatgtccagttctagaagatcttcaactatctaatataataaacttgggaagttacactcgtgattattttgatgactttgaaa |
114 |
Q |
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| T |
975172 |
atgatgcttctagatggatgtccagttcttgaagatcttcaactatgttatatat---acatgacacgtcagagtcatcattctcttgatgactttgaaa |
975076 |
T |
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| Q |
115 |
gcagctcaatgttaagaaagttgaacagagcagatattac |
154 |
Q |
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| T |
975075 |
gcagctcaatgttaaaaaaattgaacagagcagatattac |
975036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 409670 - 409721
Alignment:
| Q |
18 |
atgcttctagacgcatgtccagttctagaagatcttcaactatctaatataa |
69 |
Q |
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| T |
409670 |
atgcttctagatggatgtccagttcttcaagatcttcaactgtctaatataa |
409721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 1402851 - 1402898
Alignment:
| Q |
21 |
cttctagacgcatgtccagttctagaagatcttcaactatctaatata |
68 |
Q |
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| T |
1402851 |
cttctggatgcatgtccacttcttgaagatcttcaactatctaatata |
1402898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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