View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_low_17 (Length: 249)
Name: NF17305_low_17
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 13954452 - 13954227
Alignment:
| Q |
8 |
ccaagaatattcttcatacttcactctgaagcagctgataatggaattcattgactttaannnnnnnnnnnnnctgacaagaatgactttatttgttaga |
107 |
Q |
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| T |
13954452 |
ccaacaatattcttcatacttcactctgaagcagctgataatggaattcattgactttaattttttttttt--ctgacaagaatgactttatttgttaga |
13954355 |
T |
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| Q |
108 |
ttctgattataattataaatataatttaaccaagtaaaggaactattgaaaaggagctaagatatagaagtattaatta-taggtcttgttaacgggttc |
206 |
Q |
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| T |
13954354 |
ttctgattataattataaatataatttaaccaagtaaaggaactattgaaaaggagctaagataaagaagtattaatgattaggtcttgttaacgggtgc |
13954255 |
T |
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| Q |
207 |
cctcgaggcgggacactcttttaggatt |
234 |
Q |
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| T |
13954254 |
ctccgaggtggaacactctttaaggatt |
13954227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 4032888 - 4032989
Alignment:
| Q |
83 |
gacaagaatgactttatttgttagattctgattataattataaatataatttaaccaagtaaaggaactattgaaaaggagctaagatatagaagtatta |
182 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
4032888 |
gacaagaatgactttatttgttagattctgattctgattataaatataatttaaccaagtaaaggaactattgaaaaggagctaagataaaggagtatta |
4032987 |
T |
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| Q |
183 |
at |
184 |
Q |
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|| |
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| T |
4032988 |
at |
4032989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 4032837 - 4032877
Alignment:
| Q |
27 |
ttcactctgaagcagctgataatggaattcattgactttaa |
67 |
Q |
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| T |
4032837 |
ttcactttgaagcacctgataatggaattcattgactttaa |
4032877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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