View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17305_low_2 (Length: 723)

Name: NF17305_low_2
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17305_low_2
NF17305_low_2
[»] chr3 (2 HSPs)
chr3 (139-723)||(29391587-29392176)
chr3 (9-116)||(29391482-29391588)


Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 139 - 723
Target Start/End: Original strand, 29391587 - 29392176
Alignment:
Q  139 atttgaaagtaagaaactacagttgtttttctagaccgtgcgcttatttgaccagagaccaaattggaaaaatctatggctgtggggttaccactcgaat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29391587 atttgaaagtaagaaactacagttgtttttctagaccgtgcgcttatttgaccagagaccaaattagaaaaatctatggctgtggggttaccactcgaat 29391686  T
Q  239 ttatgtcattttccaccagttttgaacatccccaatgataaataaatgcaatggtctattacggnnnnnnnnnnnnnnnnnnnnngcaagcttggcacca 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||    
T  29391687 ttatgtcattttccaccagttttgaacatccccaatgataaataaatgcaatggtctattacggcttcttcttcttcttcttcttgcaagcttggcacca 29391786  T
Q  339 gctgtgtagagtagttgactacattacaacatcaaacaatatcccacttgcacctaacaaaatcacactctctactccaaaatcttactaacccattgtc 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29391787 gctgtgtagagtagttgactacattacaacatcaaacaatatcccacttgcacctaacaaaatcacactctctactccaaaatcttactaacccattgtc 29391886  T
Q  439 attggatttcacgacaatgtattgtatatatacctacgcgcatgcactaatatatgc-ttccacttttacaatgtgagatggat---------------- 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                    
T  29391887 attggatttcacgacaatgtattgtatatatacctacgcgcatgcactaatatatgctttccacttttacaatgtgagatggatcatattcatgggtcaa 29391986  T
Q  522 tcattctcattttttaacctaaaaccaaaatgatttaatgtaaccttgattaatcctcgtaatatattgtaccatggacaaaggtcctgaaataataatg 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||| ||||||||||||||    
T  29391987 tcattctcattttttaacctaaaaccaaaatgatttaatgtaacctt-----------gtaatatattgtaccatggacaaaggt-ctgaaataataatg 29392074  T
Q  622 tggcagtatatgtcattgtcgctaattaacaaaagtctattgtttggtnnnnnnnncaagtctatttgttttacatgccatgtgatttgtctatcttcta 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  29392075 tggcagtatatgtcattgtcgctaattaacaaaagtctattgtttggtaaaaaaaacaagtctatttgttttacatgccatgtgatttgtctatcttcta 29392174  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 29391482 - 29391588
Alignment:
Q  9 aatattacaatagtaaaacgagaacattctcttgtttaaaagactaagatcaaaatccgattaaacgacaaaatccataaacctatataaccctataaaa 108  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  29391482 aatattacaagagtaaaacgagaacattctcttgtttaaa-gactaagatcaaaatccgattaaacgacaaaaaccataaacctatataaccccataaaa 29391580  T
Q  109 aataacat 116  Q
    ||||||||    
T  29391581 aataacat 29391588  T

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