View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17305_low_3 (Length: 488)

Name: NF17305_low_3
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17305_low_3
NF17305_low_3
[»] chr5 (17 HSPs)
chr5 (19-470)||(8528583-8529050)
chr5 (198-470)||(8535333-8535608)
chr5 (84-419)||(9074773-9075109)
chr5 (198-432)||(8677637-8677871)
chr5 (198-419)||(1600336-1600554)
chr5 (198-433)||(8644044-8644279)
chr5 (200-433)||(8636701-8636934)
chr5 (81-190)||(8535183-8535294)
chr5 (198-417)||(8548146-8548365)
chr5 (37-190)||(8548409-8548562)
chr5 (234-289)||(8641242-8641297)
chr5 (358-436)||(8641357-8641435)
chr5 (305-349)||(2856974-2857018)
chr5 (305-349)||(2874584-2874628)
chr5 (201-289)||(9003305-9003393)
chr5 (117-186)||(1600601-1600670)
chr5 (305-349)||(2845147-2845191)
[»] chr4 (1 HSPs)
chr4 (19-470)||(9442744-9443211)
[»] chr7 (2 HSPs)
chr7 (198-419)||(48361902-48362128)
chr7 (223-390)||(35779694-35779861)
[»] chr1 (1 HSPs)
chr1 (198-419)||(5130638-5130860)
[»] scaffold0627 (1 HSPs)
scaffold0627 (198-293)||(4492-4587)
[»] chr6 (2 HSPs)
chr6 (198-291)||(16716179-16716272)
chr6 (306-412)||(16716299-16716405)


Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 8528583 - 8529050
Alignment:
Q  19 atatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528583 atatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 8528682  T
Q  119 gtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||    
T  8528683 gtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagattcaattgccaataaaaataaaattttacc 8528782  T
Q  203 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528783 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccg 8528882  T
Q  303 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttca 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528883 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttca 8528982  T
Q  403 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528983 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 8529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 198 - 470
Target Start/End: Original strand, 8535333 - 8535608
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8535333 ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt 8535432  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 397  Q
       | |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  8535433 gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcacctt 8535532  T
Q  398 cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatc 470  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||||||   ||| |||||||||| ||||||||    
T  8535533 cttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatc 8535608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 84 - 419
Target Start/End: Complemental strand, 9075109 - 9074773
Alignment:
Q  84 ttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaacc 182  Q
    |||||||||||||| ||||||| |||||| || | |||||||||||| ||||  || ||||||| ||| ||||||||||||||||| ||||  || ||      
T  9075109 ttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatgacttgtacggaaa-ataaagt 9075011  T
Q  183 atcagatttaaaatt-ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggat 281  Q
    || |||    | ||| ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9075010 attagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggat 9074911  T
Q  282 tacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgac 381  Q
    |||||||||| | |||    |||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| ||    
T  9074910 tacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataac 9074811  T
Q  382 aatatggcagcaccttcttcaaagtgttttatcggcca 419  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9074810 aatatggcagcaccttcttcaaagtgttttatcggcca 9074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 198 - 432
Target Start/End: Original strand, 8677637 - 8677871
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
T  8677637 ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8677735  T
Q  298 atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 396  Q
        ||  | || |||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||||||     
T  8677736 ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccc 8677835  T
Q  397 tcttcaaagtgttttatcggccagcttaaaccataa 432  Q
    |||||||||||||||| |||||| | ||||||||||    
T  8677836 tcttcaaagtgttttaccggccaacataaaccataa 8677871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 198 - 419
Target Start/End: Complemental strand, 1600554 - 1600336
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |    
T  1600554 ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct 1600455  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 397  Q
       |||||||||||||||  |||| ||||| | | ||||||  ||||||| || ||| | ||||||||   | ||| |||| ||||||||||||||||||    
T  1600454 gaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt 1600358  T
Q  398 cttcaaagtgttttatcggcca 419  Q
    |||||||||||| |||||||||    
T  1600357 cttcaaagtgttgtatcggcca 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 198 - 433
Target Start/End: Original strand, 8644044 - 8644279
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
T  8644044 ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8644142  T
Q  298 atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 396  Q
        ||  | || ||||||||||||||||||||  ||| ||| |  ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| ||     
T  8644143 ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccc 8644242  T
Q  397 tcttcaaagtgttttatcggccagcttaaaccataac 433  Q
    |||||||||| ||||| |||||| | |||||||||||    
T  8644243 tcttcaaagttttttaccggccaacataaaccataac 8644279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 200 - 433
Target Start/End: Original strand, 8636701 - 8636934
Alignment:
Q  200 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat 299  Q
    ||||||||||||||||||| ||||| |||||| |||||||||  |||||||||||||| |||||||||||||  ||||| |||| ||||| | | |        
T  8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga 8636800  T
Q  300 ccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttct 399  Q
       | | || ||||||| |||||||||||| |||  ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||    
T  8636801 agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctct 8636900  T
Q  400 tcaaagtgttttatcggccagcttaaaccataac 433  Q
    ||||||||||||| |||||| | || ||||||||    
T  8636901 tcaaagtgttttaccggccatcatataccataac 8636934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 8535183 - 8535294
Alignment:
Q  81 agtttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatc 178  Q
    |||||||||||||| || |||||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||| |||||||| ||||||    
T  8535183 agtttaaaatataactggtaacataggaaacttacagaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatc 8535282  T
Q  179 aaccatcagatt 190  Q
    ||||||||||||    
T  8535283 aaccatcagatt 8535294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 198 - 417
Target Start/End: Complemental strand, 8548365 - 8548146
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||||||| ||| | |||||||||||  | | |    
T  8548365 ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattgt 8548266  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 397  Q
         |   ||||||||||||||| ||||||  |||||||| || || |  ||||| ||||||||||   | ||||||||| |||||| ||||||||| |    
T  8548265 gaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccct 8548166  T
Q  398 cttcaaagtgttttatcggc 417  Q
    ||||||||||||||| ||||    
T  8548165 cttcaaagtgttttaccggc 8548146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 8548562 - 8548409
Alignment:
Q  37 taacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcg 135  Q
    |||||||| | |||| ||| ||||||| |||||  ||||||| ||||||||| ||||||  |||||| |  ||| | ||||| | ||||||||||||||     
T  8548562 taacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactca 8548464  T
Q  136 actcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt 190  Q
     || ||||||| ||| ||||||||||| || || || ||||||||||||||||||    
T  8548463 tcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagatt 8548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
Q  234 tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 289  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||| ||||||||||    
T  8641242 tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 8641357 - 8641435
Alignment:
Q  358 aaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacccc 436  Q
    ||||||||| ||||||||||| || |||  |||||||| |||||||||||| ||| |||||| | || |||||||||||    
T  8641357 aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataacccc 8641435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
Q  305 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 349  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
T  2857018 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2856974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
Q  305 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 349  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
T  2874628 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2874584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
Q  201 ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 289  Q
    |||||||| || |||||  ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| ||||||||||    
T  9003305 ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 1600670 - 1600601
Alignment:
Q  117 aagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatca 186  Q
    ||||||||||||| ||| | || ||||||| ||| ||||||||||||||||| || | |||| |||||||    
T  1600670 aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatca 1600601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
Q  305 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 349  Q
    |||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  2845191 tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt 2845147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 9442744 - 9443211
Alignment:
Q  19 atatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 118  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9442744 atatcaaccgaagtaacctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaa 9442843  T
Q  119 gtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttacc 202  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||                ||||||||||||    
T  9442844 gtccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatcaaccatcagattcaattgccaataaaaataaaattttacc 9442943  T
Q  203 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  9442944 ttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataatttttccg 9443043  T
Q  303 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttca 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9443044 actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttca 9443143  T
Q  403 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443144 aagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 9443211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 198 - 419
Target Start/End: Complemental strand, 48362128 - 48361902
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaatta-----gacttggaatgtgtgggattacttcaaaat 292  Q
    |||||||||||||| |||||  ||||| |||||  |||||||||| |||||||||||||||||||     |||||||||| ||||||||||||||||||     
T  48362128 ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaag 48362029  T
Q  293 aatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagc 392  Q
    ||  |   |||||||| |||||  ||||| ||||| | | |||||| |||||||| || ||| | ||||  | | ||||||||||| |||||||||||||    
T  48362028 aacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagc 48361929  T
Q  393 accttcttcaaagtgttttatcggcca 419  Q
    |||||||||||||||||||||||||||    
T  48361928 accttcttcaaagtgttttatcggcca 48361902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 223 - 390
Target Start/End: Original strand, 35779694 - 35779861
Alignment:
Q  223 tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa 322  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | |||   ||| ||||| ||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
Q  323 ctttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggca 390  Q
    ||||| | |||||||| ||||||||  ||||| ||||||||||| | ||||||||| |||||||||||    
T  35779794 ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca 35779861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 198 - 419
Target Start/End: Original strand, 5130638 - 5130860
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 297  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| ||||||||||  |  |||    
T  5130638 ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt 5130737  T
Q  298 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct 396  Q
       | | ||||||||||||||||||||||| | | |||||| || ||||| | || ||  |||||| ||| |||||||||||  |||||||||||||||     
T  5130738 gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc 5130837  T
Q  397 tcttcaaagtgttttatcggcca 419  Q
    |||||||||||||||| ||||||    
T  5130838 tcttcaaagtgttttaccggcca 5130860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 4492 - 4587
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 293  Q
    ||||||||||||||||||||  |||||||||||| |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  4492 ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata 4587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 16716179 - 16716272
Alignment:
Q  198 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaa 291  Q
    ||||||||||||||||||||  |||||||||||  |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  16716179 ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaa 16716272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 16716299 - 16716405
Alignment:
Q  306 cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaag 405  Q
    ||||||||||||||||   ||||  |||||||| | ||| || ||||| ||||||||||     ||||||||| |||||| | ||||||| |||||||||    
T  16716299 cccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaatacgccagcaccctcttcaaag 16716398  T
Q  406 tgtttta 412  Q
    |||||||    
T  16716399 tgtttta 16716405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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