View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17305_low_4 (Length: 428)
Name: NF17305_low_4
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17305_low_4 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 32481923 - 32481518
Alignment:
| Q |
19 |
atacgcagattactatcacagattctcaatcccaaccctgatagtagaatatctactgctaaaataatggaaagtcgttggttcagaaaaggatt-acat |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32481923 |
atacgcagattactatcacagattctcaatcccaaccctgatagtagaatatctactgctaaaataatggaaagtcgttggttcagaaaaggatttacat |
32481824 |
T |
|
| Q |
118 |
ttggaaagtgttcaagtagaaagagagattacaaatgtggctgcaaatgctgagtctgataaagctattgttgaaaatgaaattgctgttgttgagccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32481823 |
ttggaaagtgttcaagtagaaagagagattacaaatgtggctgcaaatgctgagtctgataaagctattgttgaaaatgaaattgctgttgttgagccaa |
32481724 |
T |
|
| Q |
218 |
atcaagaattggttcaaccaaaatatcttaatgcttttcacatactttctctatctgcagggctcgatttgtctgtcttttttgcaactaataatgatga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32481723 |
atcaagaattggttcaaccaaaatatcttaatgcttttcacatactttctctatctgcagggctcgatttgtctgtcttttttgcaagtaataatgatga |
32481624 |
T |
|
| Q |
318 |
tgaaattgaagacatcaagtttacttccaagagctcggcctcctctatcatatcaacaatggaggatattgcacgcatgttgaatatgaagatagtaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32481623 |
tgaaattgaagacatcaagtttacttccaagagctcggcctcctctatcatatcaacaatggaggatattgcacacatgttgaatatgaagatagtaaag |
32481524 |
T |
|
| Q |
418 |
aataat |
423 |
Q |
| |
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|||||| |
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| T |
32481523 |
aataat |
32481518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 12728647 - 12728329
Alignment:
| Q |
19 |
atacgcagattactatcacagattctcaatcccaaccctgatagtagaatatct-actgctaaaataatggaaagtcgttggttcagaaaaggattacat |
117 |
Q |
| |
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||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || |||||| |||||||||||| || |
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| T |
12728647 |
atacgtagattattatcaaagattctcaatcccaaccctgatcgtagaatatcttactgctaaaataatggaaaatcattggttgagaaaaggattaaat |
12728548 |
T |
|
| Q |
118 |
ttggaaagtgttcaagtagaaagagagattacaaatgtggctgcaaatgctgagtctgataaagctattgttgaaaatgaaattgctgttgttgagccaa |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
12728547 |
ttggaaagtgttcaaatagaaagagagattacaaatgtggctgaaaatgtttagtctgataaagctagtgttgaaaatgaaattactattgttgagccaa |
12728448 |
T |
|
| Q |
218 |
atcaagaattggttcaaccaaaatatcttaatgcttttcacatactttctctatctgcagggctcgatttgtctgtcttttttgcaactaataatgatga |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||| |
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| T |
12728447 |
atcaagaattggttcaaccaaaatatcttaatgcttttcacatactttctctatctgcagggctcgatttgtctgtcttgtgt-----aagtaatgatga |
12728353 |
T |
|
| Q |
318 |
tgaaattgaagacatcaagtttac |
341 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
12728352 |
tgaaattgaagacatcaagtttac |
12728329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 63 - 423
Target Start/End: Original strand, 46970567 - 46970930
Alignment:
| Q |
63 |
tagaatatctactgctaaaataatggaaagtcgttggttcagaaaaggattacatttggaaagtgttcaagtagaaagagagattacaaatgtggctgca |
162 |
Q |
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||||||||||||| ||||||||||||||| || |||||| ||||||||||| |||||| ||| ||| |||| |||||||| || || ||| ||||||| |
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| T |
46970567 |
tagaatatctactactaaaataatggaaaatccttggtttagaaaaggattgcatttgaaaaccgttaaagtcgaaagagatgttccagatgcggctgca |
46970666 |
T |
|
| Q |
163 |
aatgctgagtctgataaagctattgt------tgaaaatgaaattgctgttgttgagccaaatcaagaattggttcaaccaaaatatcttaatgcttttc |
256 |
Q |
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|| ||||||||||||| |||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
46970667 |
gattttgagtctgataaatctattgagttgtatgaaaatgaaagtgttgttgttgatccaaatcaagaatcggttcaaccgaaatatcttaatgcttttc |
46970766 |
T |
|
| Q |
257 |
acatactttctctatctgcagggctcgatttgtctgtcttttttgcaactaataatgatgatgaaattgaagacatcaagtttacttccaagagctcggc |
356 |
Q |
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||||||||||| |||||||| | || |||||||||||| |||||| | |||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
46970767 |
acatactttctttatctgcaagacttgatttgtctgtcctttttg---agaggaatgatgatgaaattgaagacatcaagtttacctccgtgagctcggc |
46970863 |
T |
|
| Q |
357 |
ctcctctatcatatcaacaatggaggatattgcacgcatgttgaatatgaagatagtaaagaataat |
423 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||| |
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|
| T |
46970864 |
ctcctctatcatatcaacaatagaggatattgcacacattttgaagatgaagatagtaaagaataat |
46970930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 13149 - 13215
Alignment:
| Q |
19 |
atacgcagattactatcacagattctcaatcccaaccctgatagtagaatatc-tactgctaaaata |
84 |
Q |
| |
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||||| |||||| ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
13149 |
atacgtagattattatcaaagattctcaatcccaaccttgatagtagaatatcttactgctaaaata |
13215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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