View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17305_low_7 (Length: 380)

Name: NF17305_low_7
Description: NF17305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17305_low_7
NF17305_low_7
[»] chr2 (6 HSPs)
chr2 (1-345)||(42205661-42206013)
chr2 (159-227)||(18570971-18571040)
chr2 (190-240)||(12464872-12464922)
chr2 (170-227)||(14268735-14268793)
chr2 (195-225)||(18029593-18029623)
chr2 (199-259)||(12748651-12748711)
[»] chr5 (3 HSPs)
chr5 (168-263)||(28296291-28296387)
chr5 (190-253)||(9878055-9878118)
chr5 (163-225)||(9055569-9055631)
[»] chr8 (4 HSPs)
chr8 (193-257)||(14227191-14227255)
chr8 (193-257)||(37225769-37225833)
chr8 (190-240)||(10170409-10170459)
chr8 (193-225)||(40063952-40063984)
[»] chr1 (5 HSPs)
chr1 (193-258)||(10475003-10475068)
chr1 (202-257)||(17831566-17831621)
chr1 (159-225)||(19637769-19637836)
chr1 (203-255)||(3490426-3490478)
chr1 (193-257)||(22881642-22881706)
[»] chr7 (2 HSPs)
chr7 (167-225)||(2525843-2525902)
chr7 (193-262)||(19930967-19931040)
[»] chr4 (2 HSPs)
chr4 (190-240)||(2796532-2796582)
chr4 (193-225)||(19195188-19195220)
[»] chr3 (4 HSPs)
chr3 (170-235)||(18268007-18268073)
chr3 (193-255)||(52067067-52067129)
chr3 (159-215)||(23271985-23272042)
chr3 (193-225)||(33548843-33548875)
[»] chr6 (2 HSPs)
chr6 (155-254)||(7377951-7378051)
chr6 (202-257)||(20371145-20371201)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 42205661 - 42206013
Alignment:
Q  1 ttcacagatttatttgcacttttgattgattattttttctagttgtgatatgatatcttaatccaacctatcctatacttcacagttagttccctgnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  42205661 ttcacagatttatttgcacttttgattgattattttttctagttgtgatatgatatcttaatccaacctatcctatacttcacagttagttccctgcttt 42205760  T
Q  101 nnnaattattattctatatgaagcacctttactccttggattaggcgtgttcggtg-------catatcgtgtccgacaccgacacatatgat-attttc 192  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||| ||||||    
T  42205761 tttaattattattctatatgaagcacctttactccttggattaggcgtgttcggtgtcagatacatatcgtgtccggcaccgacacatatgattattttc 42205860  T
Q  193 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgtttgagtcttcctactgttctacaatttgactttct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  42205861 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgtttgagtcttcgtactattctacaatttgactttct 42205960  T
Q  293 catcattgacatagctgacgttttattttccgtttgtgtgagttatttgtcat 345  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42205961 catcattgacatagctgacgttttattttccatttgtgtgagttatttgtcat 42206013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 18571040 - 18570971
Alignment:
Q  159 tatcgtgtccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 227  Q
    |||||||| |||||| |||||||||||| |  || ||||| ||||||||||||||||||||| |||||||    
T  18571040 tatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttg 18570971  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 12464872 - 12464922
Alignment:
Q  190 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 240  Q
    |||||| | ||||||||||||||||||||||||||| ||| ||||| ||||    
T  12464872 ttcaatcatgtcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 14268735 - 14268793
Alignment:
Q  170 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 227  Q
    |||||||||||||| || |  |||||||||||||||||||||||||||||  |||||||    
T  14268735 acaccgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgttg 14268793  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 18029593 - 18029623
Alignment:
Q  195 ttaagtcattttctcaaattattattggtgt 225  Q
    |||||||||||||||||||||||||||||||    
T  18029593 ttaagtcattttctcaaattattattggtgt 18029623  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 12748711 - 12748651
Alignment:
Q  199 gtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgttt 259  Q
    |||||||||||||||||||||   |||  || ||||  |||||||||||||||||||||||    
T  12748711 gtcattttctcaaattattatccatgtcagcgtgtccgtgtcgtgtccggtgtctgtgttt 12748651  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 28296387 - 28296291
Alignment:
Q  168 cgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgtttgagt 263  Q
    ||||||| |||||||||| ||  || ||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||  ||||||||||||||||    
T  28296387 cgacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtcgacttgtccatgtcgtgtcttgtgtctgtgtttgagt 28296291  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 9878055 - 9878118
Alignment:
Q  190 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 253  Q
    ||||||||| |||| ||||||||||||||||||||| | | ||||| |||| ||| ||||||||    
T  9878055 ttcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcttgttcggtgtct 9878118  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 9055631 - 9055569
Alignment:
Q  163 gtgtccgacaccgacacatatgatattttcaattaagtcattttctcaaattattattggtgt 225  Q
    |||| ||||||||||||||||||||  ||| |||| | |||||| |||||||| |||||||||    
T  9055631 gtgttcgacaccgacacatatgatacattctattatgccattttttcaaattactattggtgt 9055569  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 14227255 - 14227191
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgt 257  Q
    ||||| || |||||||||||||||||||||||||| | ||||| || ||||||| ||||||||||    
T  14227255 aattatgttattttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgtgt 14227191  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 37225769 - 37225833
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgt 257  Q
    ||||| || |||||||||||||||||||||||| | |||||| |||||||||  | |||||||||    
T  37225769 aattatgttattttctcaaattattattggtgtagacatgtctatgtcgtgtatgatgtctgtgt 37225833  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 10170409 - 10170459
Alignment:
Q  190 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 240  Q
    ||||||||| | |||||||||||||||||||||||||| | || |||||||    
T  10170409 ttcaattaatttattttctcaaattattattggtgttgacgtgccaatgtc 10170459  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 40063984 - 40063952
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgt 225  Q
    ||||| |||||||||||||||||||||||||||    
T  40063984 aattatgtcattttctcaaattattattggtgt 40063952  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 10475003 - 10475068
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgtt 258  Q
    ||||| || |||||||||| ||||||  ||||| ||| |||||||||||||||||||||| |||||    
T  10475003 aattatgtgattttctcaagttattagcggtgtcggcgtgtcaatgtcgtgtccggtgtccgtgtt 10475068  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 17831566 - 17831621
Alignment:
Q  202 attttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgt 257  Q
    |||||||||||||||||  ||||| ||| ||||| |||||| ||||||||||||||    
T  17831566 attttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgt 17831621  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 19637836 - 19637769
Alignment:
Q  159 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgt 225  Q
    ||||||||||||||||||||||||||| ||  || ||| | |||||||||| |||||||||| |||||    
T  19637836 tatcgtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgt 19637769  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 3490426 - 3490478
Alignment:
Q  203 ttttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 255  Q
    ||||||||||||||||   |||| ||| ||||| |||||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgt 3490478  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 22881642 - 22881706
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtgt 257  Q
    ||||| || ||||| ||||||||||| | |||| ||| ||||| |||||||||||||||| ||||    
T  22881642 aattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgt 22881706  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 2525843 - 2525902
Alignment:
Q  167 ccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgt 225  Q
    |||||||||||||||||||| || || ||||| ||||||| ||||||||||||| |||||    
T  2525843 ccgacaccgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgt 2525902  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 19930967 - 19931040
Alignment:
Q  193 aattaagtcattttctcaaattatt----attggtgttggcatgtcaatgtcgtgtccggtgtctgtgtttgag 262  Q
    ||||| |||||||| ||||||||||    |||||||| | | |||| ||||||||||||||||| |||||||||    
T  19930967 aattatgtcattttatcaaattattgagtattggtgtcgacgtgtccatgtcgtgtccggtgtccgtgtttgag 19931040  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 2796582 - 2796532
Alignment:
Q  190 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 240  Q
    ||||||||| ||||||||||||||||||| ||||||||   ||||||||||    
T  2796582 ttcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtc 2796532  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 19195188 - 19195220
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgt 225  Q
    ||||| |||||||||||||||||||||||||||    
T  19195188 aattacgtcattttctcaaattattattggtgt 19195220  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 18268007 - 18268073
Alignment:
Q  170 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttggcatgtca 235  Q
    |||||||||||| |||| |  ||||||||| ||||||||||||||||||||  |||||| |||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgacatgtca 18268073  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 52067129 - 52067067
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 255  Q
    |||||| ||||||||| |||||||||||||| | | | ||||| ||| |||||||||||||||    
T  52067129 aattaattcattttcttaaattattattggtatcgacgtgtcagtgttgtgtccggtgtctgt 52067067  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 23271985 - 23272042
Alignment:
Q  159 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaatta 215  Q
    |||||||||| |||||||||||||||| ||  |||||||| |||| ||||||||||||    
T  23271985 tatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 33548875 - 33548843
Alignment:
Q  193 aattaagtcattttctcaaattattattggtgt 225  Q
    ||||||||||||||||||||||||||| |||||    
T  33548875 aattaagtcattttctcaaattattatcggtgt 33548843  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 7378051 - 7377951
Alignment:
Q  155 tgcatatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 253  Q
    ||||| ||||||||||||||||||||||| | ||  || ||||| || ||||||||||||| |||  ||||| ||  ||||  ||| |||||||||||||    
T  7378051 tgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcggggtgtctgtgttgtgtccggtgtct 7377952  T
Q  254 g 254  Q
    |    
T  7377951 g 7377951  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 20371145 - 20371201
Alignment:
Q  202 attttctcaaattattattggtgttggcatgtcaatgt-cgtgtccggtgtctgtgt 257  Q
    |||||||||||||||||  ||||| ||| ||||||||| |||||||||| |||||||    
T  20371145 attttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtccggtttctgtgt 20371201  T

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