View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17306_high_1 (Length: 836)

Name: NF17306_high_1
Description: NF17306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17306_high_1
NF17306_high_1
[»] chr7 (17 HSPs)
chr7 (52-192)||(35109691-35109831)
chr7 (52-192)||(38265229-38265369)
chr7 (52-192)||(41151172-41151313)
chr7 (52-191)||(21577091-21577230)
chr7 (52-181)||(16059356-16059485)
chr7 (52-185)||(34721834-34721967)
chr7 (52-192)||(12472121-12472261)
chr7 (70-185)||(37095209-37095324)
chr7 (52-191)||(38405147-38405286)
chr7 (65-191)||(245257-245383)
chr7 (52-192)||(45278452-45278592)
chr7 (52-181)||(18116947-18117076)
chr7 (54-179)||(11216771-11216896)
chr7 (52-181)||(48176399-48176529)
chr7 (53-185)||(23028684-23028816)
chr7 (84-185)||(28407540-28407637)
chr7 (142-185)||(39234853-39234896)
[»] chr2 (25 HSPs)
chr2 (52-191)||(45136963-45137102)
chr2 (54-191)||(17136389-17136526)
chr2 (52-191)||(40156040-40156179)
chr2 (52-191)||(25987654-25987794)
chr2 (53-192)||(21637898-21638037)
chr2 (53-191)||(10745225-10745363)
chr2 (52-191)||(2754044-2754183)
chr2 (52-174)||(6672803-6672925)
chr2 (52-185)||(36836328-36836461)
chr2 (52-192)||(5039420-5039560)
chr2 (53-191)||(36380125-36380263)
chr2 (52-185)||(44650393-44650526)
chr2 (53-191)||(26690155-26690293)
chr2 (74-191)||(558432-558549)
chr2 (55-190)||(3200884-3201019)
chr2 (52-191)||(2357069-2357207)
chr2 (52-191)||(7860139-7860278)
chr2 (53-182)||(30372682-30372811)
chr2 (54-185)||(33066592-33066723)
chr2 (53-184)||(13047156-13047282)
chr2 (85-170)||(21487181-21487266)
chr2 (77-181)||(4553561-4553666)
chr2 (135-185)||(2098825-2098875)
chr2 (736-818)||(39538997-39539079)
chr2 (67-122)||(20961496-20961551)
[»] chr3 (26 HSPs)
chr3 (52-185)||(8400855-8400988)
chr3 (52-185)||(7417798-7417931)
chr3 (52-191)||(50823698-50823837)
chr3 (52-191)||(50852023-50852162)
chr3 (52-185)||(35198765-35198898)
chr3 (53-185)||(22855888-22856020)
chr3 (52-192)||(43334046-43334186)
chr3 (63-185)||(52545332-52545454)
chr3 (52-181)||(34824556-34824685)
chr3 (53-181)||(55468000-55468129)
chr3 (67-192)||(29635883-29636009)
chr3 (81-184)||(22371729-22371832)
chr3 (99-185)||(37330606-37330692)
chr3 (74-191)||(19872476-19872593)
chr3 (99-184)||(30534902-30534987)
chr3 (53-148)||(48077977-48078072)
chr3 (99-185)||(37454743-37454829)
chr3 (112-192)||(25910658-25910738)
chr3 (52-192)||(50725989-50726129)
chr3 (52-192)||(50786719-50786859)
chr3 (66-192)||(42876229-42876355)
chr3 (91-186)||(30203652-30203744)
chr3 (84-185)||(25589253-25589347)
chr3 (141-192)||(773666-773717)
chr3 (109-192)||(39438821-39438903)
chr3 (134-179)||(31297529-31297574)
[»] chr8 (21 HSPs)
chr8 (52-192)||(19723311-19723451)
chr8 (53-192)||(11404002-11404141)
chr8 (52-191)||(4840140-4840279)
chr8 (54-192)||(29767190-29767326)
chr8 (54-185)||(32296638-32296769)
chr8 (70-181)||(17095568-17095679)
chr8 (52-191)||(22711509-22711648)
chr8 (55-191)||(28739554-28739690)
chr8 (85-191)||(36261679-36261785)
chr8 (53-192)||(41553286-41553425)
chr8 (81-164)||(21355004-21355087)
chr8 (52-190)||(11610280-11610418)
chr8 (98-192)||(11909415-11909509)
chr8 (55-185)||(30682842-30682971)
chr8 (85-186)||(43288105-43288206)
chr8 (67-151)||(24475029-24475113)
chr8 (54-128)||(27881044-27881118)
chr8 (54-128)||(28021225-28021299)
chr8 (124-191)||(27879553-27879620)
chr8 (124-191)||(28019734-28019801)
chr8 (64-191)||(44741914-44742038)
[»] chr5 (10 HSPs)
chr5 (52-192)||(17064323-17064463)
chr5 (55-186)||(20983001-20983132)
chr5 (52-185)||(37976546-37976683)
chr5 (93-185)||(41910865-41910957)
chr5 (85-179)||(31673863-31673956)
chr5 (69-185)||(5009416-5009531)
chr5 (141-191)||(35237052-35237102)
chr5 (62-180)||(39162859-39162977)
chr5 (53-104)||(35237103-35237154)
chr5 (85-142)||(18303352-18303409)
[»] chr1 (17 HSPs)
chr1 (52-181)||(30054445-30054574)
chr1 (52-191)||(20014458-20014597)
chr1 (53-192)||(30370052-30370191)
chr1 (52-192)||(45324006-45324146)
chr1 (53-192)||(12025182-12025321)
chr1 (53-181)||(21090116-21090244)
chr1 (70-191)||(22024121-22024242)
chr1 (52-190)||(4573379-4573517)
chr1 (52-183)||(30850841-30850972)
chr1 (81-191)||(14498072-14498182)
chr1 (65-192)||(33763246-33763373)
chr1 (78-192)||(33762532-33762646)
chr1 (96-174)||(35371755-35371833)
chr1 (64-172)||(44438562-44438670)
chr1 (111-192)||(35618034-35618115)
chr1 (124-192)||(17015192-17015260)
chr1 (52-98)||(15034455-15034501)
[»] chr4 (27 HSPs)
chr4 (52-192)||(46494390-46494530)
chr4 (52-191)||(51066493-51066632)
chr4 (53-184)||(36192542-36192673)
chr4 (52-191)||(51713958-51714097)
chr4 (52-191)||(32139164-32139303)
chr4 (52-185)||(7173584-7173717)
chr4 (52-185)||(30970383-30970516)
chr4 (52-191)||(50905748-50905887)
chr4 (52-185)||(39863777-39863910)
chr4 (52-154)||(8740448-8740550)
chr4 (81-191)||(29576444-29576554)
chr4 (80-192)||(55231715-55231827)
chr4 (67-192)||(2570216-2570341)
chr4 (52-191)||(47626986-47627127)
chr4 (90-191)||(676766-676867)
chr4 (108-185)||(22304090-22304167)
chr4 (78-191)||(41523423-41523536)
chr4 (53-181)||(2294719-2294841)
chr4 (85-192)||(4080544-4080651)
chr4 (63-192)||(50399634-50399763)
chr4 (63-182)||(51279035-51279154)
chr4 (54-155)||(22423378-22423479)
chr4 (119-190)||(23084459-23084530)
chr4 (737-818)||(30909502-30909583)
chr4 (116-173)||(37990606-37990663)
chr4 (87-186)||(40012548-40012646)
chr4 (138-181)||(51066240-51066283)
[»] chr6 (9 HSPs)
chr6 (52-191)||(35163743-35163882)
chr6 (73-192)||(20685346-20685465)
chr6 (54-191)||(19686820-19686957)
chr6 (52-191)||(2711733-2711866)
chr6 (74-186)||(17948702-17948814)
chr6 (52-190)||(14505519-14505655)
chr6 (79-174)||(15070152-15070247)
chr6 (52-106)||(14496352-14496406)
chr6 (77-155)||(24336640-24336718)
[»] scaffold0021 (1 HSPs)
scaffold0021 (53-185)||(107691-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (54-159)||(6994-7099)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 1e-68; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 35109691 - 35109831
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109691 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35109790  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  35109791 ggactggggcaccatcccctcaccctaaaatttttgtaacc 35109831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 38265369 - 38265229
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265369 ccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 38265270  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  38265269 ggactggggcaccatcccctcaccctaaaatttatgtaacc 38265229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 41151172 - 41151313
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattaccttt-gtaagtgctctttgagcccgaaggtcttccctgcct 150  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41151172 ccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgcct 41151271  T
Q  151 tggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  41151272 tggactggggcaccatcccctcaccctaaattttttgtaacc 41151313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 21577230 - 21577091
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  21577230 ccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgcctt 21577131  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21577130 ggactggggcaccatcccctcaccctaaaatttttgtaac 21577091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 16059485 - 16059356
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  16059485 ccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctacctt 16059386  T
Q  152 ggactggggcaccatcccctcactctaaaa 181  Q
    ||||||||||||||||||||||| ||||||    
T  16059385 ggactggggcaccatcccctcaccctaaaa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 34721834 - 34721967
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34721834 ccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgcctt 34721933  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||| ||||||||||||||||| ||||||||||    
T  34721934 ggactcgggcaccatcccctcaccctaaaatttt 34721967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 12472121 - 12472261
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  12472121 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtctt 12472220  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||    
T  12472221 ggactggggtaccatcccctcaccctaaactttgtgtaacc 12472261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 37095324 - 37095209
Alignment:
Q  70 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 169  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 37095225  T
Q  170 ctcactctaaaatttt 185  Q
    ||||| ||||||||||    
T  37095224 ctcaccctaaaatttt 37095209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 38405286 - 38405147
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||  || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  38405286 ccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgcctt 38405187  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  38405186 ggactggggcaccatcccctcaccctaaaaattttgtaac 38405147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 245383 - 245257
Alignment:
Q  65 ggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 164  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcacc 245284  T
Q  165 atcccctcactctaaaatttttgtaac 191  Q
    |||||||||| ||||||||||||||||    
T  245283 atcccctcaccctaaaatttttgtaac 245257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 45278452 - 45278592
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  45278452 ccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgcctt 45278551  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  45278552 ggactggagcaccatcccctcaccctaaaatttttgtaacc 45278592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 18117076 - 18116947
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  18117076 ccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgcctt 18116977  T
Q  152 ggactggggcaccatcccctcactctaaaa 181  Q
    ||||||||||||||||||||||| ||||||    
T  18116976 ggactggggcaccatcccctcaccctaaaa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 11216771 - 11216896
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||    
T  11216771 gagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttgg 11216870  T
Q  154 actggggcaccatcccctcactctaa 179  Q
    ||| ||||| ||| ||||||| ||||    
T  11216871 actagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 48176399 - 48176529
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccct-gcct 150  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| | |||||||| |||||| ||||||  |||    
T  48176399 ccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctcccct 48176498  T
Q  151 tggactggggcaccatcccctcactctaaaa 181  Q
    |||||||||||||||||||||||| ||||||    
T  48176499 tggactggggcaccatcccctcaccctaaaa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 23028684 - 23028816
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||| |||||||||| | || ||| ||||||| |||||| |||||||||||||||||| |||||| | ||||| |||||||| ||||||| ||||     
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctacctta 23028783  T
Q  153 gactggggcaccatcccctcactctaaaatttt 185  Q
    ||||| | |||||||| ||||  ||||||||||    
T  23028784 gactgagacaccatcctctcatcctaaaatttt 23028816  T

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Target: chr7; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 28407540 - 28407637
Alignment:
Q  84 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatt 183  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||    |  |||||||| ||||||||||||||||||| ||||||||    
T  28407540 cctttagagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggt----caagccttggattggggcaccatcccctcaccctaaaatt 28407635  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 39234853 - 39234896
Alignment:
Q  142 tccctgccttggactggggcaccatcccctcactctaaaatttt 185  Q
    |||||||| |||||||||||||||||||||||| | ||||||||    
T  39234853 tccctgccatggactggggcaccatcccctcacccaaaaatttt 39234896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 4e-68; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 45137102 - 45136963
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137102 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 45137003  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  45137002 ggactggggcaccatcccttcaccctaaaatttttgtaac 45136963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 17136389 - 17136526
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  17136389 gagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttgg 17136488  T
Q  154 actggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  17136489 actggggcaccatcccctcaccctaaaatttttgtaac 17136526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 40156040 - 40156179
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40156040 ccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctacctt 40156139  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    | |||||||||||||||||||||  |||||||||||||||    
T  40156140 gaactggggcaccatcccctcaccataaaatttttgtaac 40156179  T

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Target: chr2; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 25987794 - 25987654
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtc-ttccctgcct 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  25987794 ccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgcct 25987695  T
Q  151 tggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||| |||||||||||||||||||| ||||||||||||||||    
T  25987694 tggtctggggcaccatcccctcaccctaaaatttttgtaac 25987654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 21637898 - 21638037
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  21637898 cgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttg 21637997  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  21637998 gactagggcaccatcccctcaccctaaaatttttgtaacc 21638037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 10745363 - 10745225
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  10745363 cgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttg 10745264  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  10745263 gactggggcaccatcccctcaccctaaaatttttgtaac 10745225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 2754183 - 2754044
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||| |||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2754183 ccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgcctt 2754084  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  2754083 ggactggggcaccatcccctcaccctaaaatttttgtaac 2754044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 6672925 - 6672803
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  6672925 ccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgcctt 6672826  T
Q  152 ggactggggcaccatcccctcac 174  Q
    |||||||||||||||||||||||    
T  6672825 ggactggggcaccatcccctcac 6672803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 36836461 - 36836328
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36836461 ccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgcctt 36836362  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    |||||||||||||||||||||||  |||||||||    
T  36836361 ggactggggcaccatcccctcaccttaaaatttt 36836328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 5039420 - 5039560
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5039420 ccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctacctt 5039519  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  5039520 ggactagggcaccatcccctcactctaaaatttttgtaacc 5039560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 36380263 - 36380125
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    ||||| ||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  36380263 cgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttg 36380164  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  36380163 gactgaggcaccatcccctcaccctaaaatttttgtaac 36380125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 44650393 - 44650526
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44650393 ccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgcctt 44650492  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    |||| |||||||||||||||||| ||||||||||    
T  44650493 ggaccggggcaccatcccctcaccctaaaatttt 44650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 26690155 - 26690293
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||    
T  26690155 cgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttg 26690254  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  26690255 gactgaggcaccatcccctcaccctaaaatttttgtaac 26690293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 558549 - 558432
Alignment:
Q  74 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 173  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||    
T  558549 cccgctagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctca 558450  T
Q  174 ctctaaaatttttgtaac 191  Q
    | ||||||||||||||||    
T  558449 ccctaaaatttttgtaac 558432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 3200884 - 3201019
Alignment:
Q  55 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 154  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||    
T  3200884 agagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttaga 3200983  T
Q  155 ctggggcaccatcccctcactctaaaatttttgtaa 190  Q
    ||||||||||||| |||| | |||||||||||||||    
T  3200984 ctggggcaccatctcctcgccctaaaatttttgtaa 3201019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 2357207 - 2357069
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||||||||||  || ||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||  |||||||||||| ||||||    
T  2357207 ccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgcctt 2357109  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  2357108 ggactggggcaccatcccctcaccctaaaatttttgtaac 2357069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 7860278 - 7860139
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||| | ||| |||||||    
T  7860278 ccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgcctt 7860179  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||||| |||| ||||||||| | ||||||||||||||||    
T  7860178 ggactgaggcatcatcccctctccctaaaatttttgtaac 7860139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 30372811 - 30372682
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    ||||||| || |||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||| |||||||    
T  30372811 cgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttg 30372712  T
Q  153 gactggggcaccatcccctcactctaaaat 182  Q
     ||||||| ||||| ||||||| |||||||    
T  30372711 aactggggtaccataccctcaccctaaaat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 33066592 - 33066723
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    ||||||| ||||||||||||  | |||||| |||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| || ||||||    
T  33066592 gagagaatccgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttgg 33066691  T
Q  154 actggggcaccatcccctcactctaaaatttt 185  Q
    ||||||||||||||||||||  ||||||||||    
T  33066692 actggggcaccatcccctcatcctaaaatttt 33066723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 13047282 - 13047156
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||| |||||||||||||||||  ||  |||||||||||||||||| ||||||||||   ||||||||||||||||| ||| ||||||||||||||    
T  13047282 cgagagaatccgggttcgagccccgcatgt--ctttggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttg 13047188  T
Q  153 gactggggcaccatcccctcactctaaaattt 184  Q
    |||||| ||||||||||||||| |||||||||    
T  13047187 gactggagcaccatcccctcaccctaaaattt 13047156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 21487181 - 21487266
Alignment:
Q  85 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccc 170  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  21487181 ctttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatcccc 21487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 4553666 - 4553561
Alignment:
Q  77 gctagtgcctttggagg-gaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcact 175  Q
    |||||||  |||||||| ||||||||| ||| ||| ||||||||| ||||||||| ||| |||||||| ||| ||| |||||||||||||||||||||||    
T  4553666 gctagtgtttttggaggagaggtaaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcact 4553567  T
Q  176 ctaaaa 181  Q
    ||||||    
T  4553566 ctaaaa 4553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 2098875 - 2098825
Alignment:
Q  135 aaggtcttccctgccttggactggggcaccatcccctcactctaaaatttt 185  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 2098825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 736 - 818
Target Start/End: Complemental strand, 39539079 - 39538997
Alignment:
Q  736 acagatttaagctgcattttgcacagatgaaatttgaaggactcctcatacaccacaagatgagatgagagaaggtatgagct 818  Q
    ||||||| ||||||||||| |||| ||||||||| |||||||| ||| ||||||||||||||| ||||||| ||| |||||||    
T  39539079 acagattcaagctgcatttcgcacggatgaaattcgaaggactgctcctacaccacaagatgaaatgagagcaggaatgagct 39538997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 20961496 - 20961551
Alignment:
Q  67 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgc 122  Q
    ||||||| ||||||||||| |||||||||||||||||||| | | |||||||||||    
T  20961496 ttcgagctccgctagtgcccttggagggaggtaaatgtaaatccatttgtaagtgc 20961551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 6e-67; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 8400855 - 8400988
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400855 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 8400954  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||||||||||||||||||||| ||||||||||    
T  8400955 ggactggggcaccatcccctcaccctaaaatttt 8400988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 7417798 - 7417931
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7417798 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgcctt 7417897  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||||||||||||||||||||| ||||||||||    
T  7417898 ggactggggcaccatcccctcaccctaaaatttt 7417931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 50823698 - 50823837
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823698 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 50823797  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50823798 ggactggggcaccatcccctcaccctaaaatttttgtaac 50823837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 50852162 - 50852023
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852162 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 50852063  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50852062 ggactggggcaccatcccctcaccctaaaatttttgtaac 50852023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 35198765 - 35198898
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35198765 ccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35198864  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||||| ||||||||||||||| ||||||||||    
T  35198865 ggactggagcaccatcccctcaccctaaaatttt 35198898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 22855888 - 22856020
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  22855888 cgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttg 22855987  T
Q  153 gactggggcaccatcccctcactctaaaatttt 185  Q
    |||||| ||||||||||||||| ||||||||||    
T  22855988 gactggagcaccatcccctcaccctaaaatttt 22856020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 43334186 - 43334046
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  43334186 ccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgcctt 43334087  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||| ||||||||||||| |||||| ||||||||||    
T  43334086 ggactggggtaccatcccctcaccctaaaaattttgtaacc 43334046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 52545332 - 52545454
Alignment:
Q  63 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 162  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  52545332 cgggttcgagccccgctagtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggca 52545431  T
Q  163 ccatcccctcactctaaaatttt 185  Q
    |||||||||||| ||||||||||    
T  52545432 ccatcccctcaccctaaaatttt 52545454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 34824556 - 34824685
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||| | ||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  34824556 ccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggcctt 34824655  T
Q  152 ggactggggcaccatcccctcactctaaaa 181  Q
    ||||||||||||||||||||||| ||||||    
T  34824656 ggactggggcaccatcccctcaccctaaaa 34824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 55468000 - 55468129
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgag-cccgaaggtcttccctgcctt 151  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  55468000 cgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgcctt 55468099  T
Q  152 ggactggggcaccatcccctcactctaaaa 181  Q
    ||||||||||||||||||||||| ||||||    
T  55468100 ggactggggcaccatcccctcaccctaaaa 55468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 29635883 - 29636009
Alignment:
Q  67 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc-a 165  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |    
T  29635883 ttcgagcctcgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaa 29635982  T
Q  166 tcccctcactctaaaatttttgtaacc 192  Q
    | ||||||| ||||||||| |||||||    
T  29635983 ttccctcacgctaaaatttctgtaacc 29636009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 22371832 - 22371729
Alignment:
Q  81 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||| |||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaa 22371733  T
Q  181 attt 184  Q
    ||||    
T  22371732 attt 22371729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 37330692 - 37330606
Alignment:
Q  99 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttt 185  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 37330606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 19872593 - 19872476
Alignment:
Q  74 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 173  Q
    |||||| ||||||||||||| |||||||  ||||||||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  19872593 cccgcttgtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctca 19872494  T
Q  174 ctctaaaatttttgtaac 191  Q
      ||||||||||| ||||    
T  19872493 tcctaaaatttttataac 19872476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 30534987 - 30534902
Alignment:
Q  99 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaattt 184  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaattt 30534902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 48078072 - 48077977
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 148  Q
    ||||||||| |||||||||||| | |||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  48078072 cgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 37454829 - 37454743
Alignment:
Q  99 aaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttt 185  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaatttt 37454743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 25910738 - 25910658
Alignment:
Q  112 tttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaatttttgtaacc 25910658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 50726129 - 50725989
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||    
T  50726129 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctacttt 50726030  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||| |||||||||||||| |||| ||| || ||||||||||    
T  50726029 ggattggggcaccatcccttcaccctacaaattttgtaacc 50725989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 50786719 - 50786859
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||| || ||||||  |||| ||||||||| | ||    
T  50786719 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaaagtcttccctacttt 50786818  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||| |||||||||||||| |||| ||| || ||||||||||    
T  50786819 ggattggggcaccatcccttcaccctacaaattttgtaacc 50786859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 42876229 - 42876355
Alignment:
Q  66 gttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacca 165  Q
    ||||||||||  |||||| |||| || ||||||||||||||||||||||||||||||||||||| |  ||| |||||||||  |||||||| ||||||||    
T  42876229 gttcgagcccgactagtgtctttagatggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcacca 42876328  T
Q  166 tcccctcactctaaaatttttgtaacc 192  Q
    ||| ||||| ||||| ||| |||||||    
T  42876329 tcctctcaccctaaattttctgtaacc 42876355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 30203744 - 30203652
Alignment:
Q  91 agggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaattttt 186  Q
    ||||||||||||||||  |||||||||| || ||||||||| ||||||| |||| || |||| |||||||||||||||||||||||||||| ||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggttttcc-tgtcttgaactggggcaccatcccctcactctaaaaatttt 30203652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 25589253 - 25589347
Alignment:
Q  84 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatt 183  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||| ||||       ||||||||||||| |||||||| ||||||||| ||||||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga-------ccctgccttggacgggggcaccctcccctcaccctaaaatt 25589345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 773666 - 773717
Alignment:
Q  141 ttccctgccttggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  773666 ttcccttccttggactggggcaccatcccctcaccctagaatttttgtaacc 773717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 39438903 - 39438821
Alignment:
Q  109 acctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||| ||||| |  || || ||||| ||| ||||| ||||||||||||| ||||||| |||||||||||||||||    
T  39438903 acctttgtaagtgttctttaaatccaaaagtctttcctaccttgaactggggcaccat-ccctcaccctaaaatttttgtaacc 39438821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 31297574 - 31297529
Alignment:
Q  134 gaaggtcttccctgccttggactggggcaccatcccctcactctaa 179  Q
    ||||||||||| ||||||||||||||| ||||| ||||||| ||||    
T  31297574 gaaggtcttccttgccttggactggggaaccatgccctcaccctaa 31297529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 19723311 - 19723451
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  19723311 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgcctt 19723410  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  19723411 ggactggggcaccatcccctcaccctaaaatttttgtaacc 19723451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 11404002 - 11404141
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11404002 cgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 11404101  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  11404102 gactggggcaccatcccctcaccctaaaatttttgtaacc 11404141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 4840140 - 4840279
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||||||||||||    
T  4840140 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgcctt 4840239  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||| ||||||||||||||||| ||||||||| ||||||    
T  4840240 ggactagggcaccatcccctcaccctaaaatttctgtaac 4840279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 29767190 - 29767326
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29767190 gagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgccttgg 29767287  T
Q  154 actggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  29767288 actggggcaccatcccctcaccctaaaatttttgtaacc 29767326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 32296769 - 32296638
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32296769 gagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 32296670  T
Q  154 actggggcaccatcccctcactctaaaatttt 185  Q
    | ||||||||||||||||||| ||||||||||    
T  32296669 attggggcaccatcccctcaccctaaaatttt 32296638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 17095568 - 17095679
Alignment:
Q  70 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17095568 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 17095667  T
Q  170 ctcactctaaaa 181  Q
    ||||| ||||||    
T  17095668 ctcaccctaaaa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 22711509 - 22711648
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||| |||||| ||| ||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  22711509 ccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgcctt 22711608  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  22711609 ggactggggcaccatcccctcatcctaaaatttttgtaac 22711648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 28739690 - 28739554
Alignment:
Q  55 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 154  Q
    |||||||| |||||| |||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28739690 agagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttgga 28739591  T
Q  155 ctggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||  ||||||||||||||| |||||| |||||||||    
T  28739590 ctgcagcaccatcccctcaccctaaaaattttgtaac 28739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 36261679 - 36261785
Alignment:
Q  85 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaattt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||  ||||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaattt 36261778  T
Q  185 ttgtaac 191  Q
    |||||||    
T  36261779 ttgtaac 36261785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 41553286 - 41553425
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||||||| ||||||| ||| ||| || ||||||||| | |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||     
T  41553286 cgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgcctta 41553385  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  41553386 gactggagcaccatcccctcaccctaaaatttttgtaacc 41553425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  81 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 11610280 - 11610418
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||| | ||| |||||||| |||||||||||||||||  |||||||| ||| || ||||||||||||| ||| |||||||||||||| | |  |||    
T  11610280 ccgagagatctcggattcgagcctcgctagtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttatctt 11610379  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaa 190  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  11610380 ggactggggcaccatcccctcaccctaaaatttttgtaa 11610418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 11909509 - 11909415
Alignment:
Q  98 taaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaaattttgtaacc 11909415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 30682842 - 30682971
Alignment:
Q  55 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 154  Q
    ||||| |||| ||||||||||| || |||||||||||| ||| ||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  30682842 agagagcccgtgttcgagccccactggtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttgga 30682941  T
Q  155 ctggggcaccatcccctcactctaaaatttt 185  Q
    || |||||||||||||||||  |||||||||    
T  30682942 ct-gggcaccatcccctcaccttaaaatttt 30682971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 43288105 - 43288206
Alignment:
Q  85 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaattt 184  Q
    |||||||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaatttt 43288204  T
Q  185 tt 186  Q
    ||    
T  43288205 tt 43288206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 24475113 - 24475029
Alignment:
Q  67 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  24475113 ttcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 27881118 - 27881044
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 128  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  27881118 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 28021299 - 28021225
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 128  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  28021299 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 27879620 - 27879553
Alignment:
Q  124 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttttgtaac 27879553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 28019801 - 28019734
Alignment:
Q  124 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttttgtaac 28019734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 44742038 - 44741914
Alignment:
Q  64 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 163  Q
    ||||||||||| ||||||||||||||||| || || ||| | | | |||||||||||||||    || || | |||||| |||||||||||||||||  |    
T  44742038 gggttcgagcctcgctagtgcctttggagagaagttaatattaatccctttgtaagtgctcca--agtcctatggtcttacctgccttggactggggtgc 44741941  T
Q  164 catcccctcactctaaaatttttgtaac 191  Q
    ||||||||||| || |||||||||||||    
T  44741940 catcccctcaccct-aaatttttgtaac 44741914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 6e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 17064323 - 17064463
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  17064323 ccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgcctt 17064422  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  17064423 ggactggggcaccatcccctcaccctaaaatttttgtaacc 17064463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 20983132 - 20983001
Alignment:
Q  55 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgga 154  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  20983132 agagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttgga 20983033  T
Q  155 ctggggcaccatcccctcactctaaaattttt 186  Q
    |||||||||||||||||||| |||||| ||||    
T  20983032 ctggggcaccatcccctcaccctaaaaatttt 20983001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 37976546 - 37976683
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaat----gtaattacctttgtaagtgctctttgagcccgaaggtcttccctg 147  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||    |||| |||||||||||||||| ||||||||||||||| || ||||    
T  37976546 ccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaattaatgtaaatacctttgtaagtgctatttgagcccgaaggtttttcctg 37976645  T
Q  148 ccttggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  37976646 ccttgaactggggcaccatcccctcaccctaaaatttt 37976683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 41910865 - 41910957
Alignment:
Q  93 ggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||  |||||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaatttt 41910957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 31673863 - 31673956
Alignment:
Q  85 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaa 179  Q
    |||||||| |||| |||||||| | |||||| |||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||    
T  31673863 ctttggagagaggaaaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 5009531 - 5009416
Alignment:
Q  69 cgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcc 168  Q
    ||||||||| ||||| |||||||| ||| ||||||||| ||  ||||||| || |||||||  ||||||||||||| ||||||| ||||| ||| |||||    
T  5009531 cgagccccgttagtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcc 5009432  T
Q  169 cctcactctaaaatttt 185  Q
    || ||| ||||||||||    
T  5009431 cc-caccctaaaatttt 5009416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 35237102 - 35237052
Alignment:
Q  141 ttccctgccttggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcactctaaaatttctgtaac 35237052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 39162977 - 39162859
Alignment:
Q  62 ccgggttcgagccccgctagtgcctttggaggg---aggtaaatgtaattacctt-tgtaagtgctctttgagcccgaaggtcttccctgccttggactg 157  Q
    ||||||||||||||  |||||||| |||||||    |||||||||||| |||||| ||||| |||||||||||||    |||||||  ||||||||||||    
T  39162977 ccgggttcgagcccaactagtgcccttggaggaggaaggtaaatgtaaataccttgtgtaaatgctctttgagcc----ggtcttctgtgccttggactg 39162882  T
Q  158 gggcaccatcccctcactctaaa 180  Q
    ||||||| |||| |||| |||||    
T  39162881 gggcaccgtcccatcaccctaaa 39162859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 35237154 - 35237103
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 104  Q
    |||||||| | || ||||||||||||||||| ||||| ||||||||||||||    
T  35237154 cgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 18303409 - 18303352
Alignment:
Q  85 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 142  Q
    ||||||||| | ||||| |||| ||| |||||||||||||||| | ||||||||||||    
T  18303409 ctttggaggaaagtaaacgtaaatacttttgtaagtgctctttaaacccgaaggtctt 18303352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 4e-62; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 30054574 - 30054445
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30054574 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgcctt 30054475  T
Q  152 ggactggggcaccatcccctcactctaaaa 181  Q
    ||||||||||||||||||||||| ||||||    
T  30054474 ggactggggcaccatcccctcaccctaaaa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 20014458 - 20014597
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  20014458 ccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgcctt 20014557  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  20014558 ggactgaggcaccatcccctcaccctaaaatttttgtaac 20014597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 30370191 - 30370052
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370191 cgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 30370092  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||  |||||||  |||||||    
T  30370091 gactggggcaccatcccctcaccttaaaattcatgtaacc 30370052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 45324006 - 45324146
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  45324006 ccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgcttt 45324105  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  45324106 ggactggggcaccatcccctcaccctaaaatttttgcaacc 45324146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 12025182 - 12025321
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12025182 cgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttg 12025281  T
Q  153 gactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  12025282 gactggggcaccaccccctcaccctaaaatttttgtaacc 12025321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 21090116 - 21090244
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  21090116 cgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttg 21090215  T
Q  153 gactggggcaccatcccctcactctaaaa 181  Q
    |||||||||||||||||||||||||||||    
T  21090216 gactggggcaccatcccctcactctaaaa 21090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 22024121 - 22024242
Alignment:
Q  70 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatccc 169  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22024121 gagccctgctagtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatccc 22024220  T
Q  170 ctcactctaaaatttttgtaac 191  Q
    ||||| ||||||||| ||||||    
T  22024221 ctcaccctaaaatttatgtaac 22024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 4573379 - 4573517
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||    
T  4573379 ccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgtttt 4573478  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaa 190  Q
    |||||| ||||| |||||||||| |||||||||||||||    
T  4573479 ggactgaggcactatcccctcaccctaaaatttttgtaa 4573517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 30850972 - 30850841
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||| |||    
T  30850972 ccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtctt 30850873  T
Q  152 ggactggggcaccatcccctcactctaaaatt 183  Q
    ||||||||||||||||||||||| ||||||||    
T  30850872 ggactggggcaccatcccctcaccctaaaatt 30850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 14498182 - 14498072
Alignment:
Q  81 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||| |||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaa 14498083  T
Q  181 atttttgtaac 191  Q
    |||||||||||    
T  14498082 atttttgtaac 14498072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 65 - 192
Target Start/End: Complemental strand, 33763373 - 33763246
Alignment:
Q  65 ggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcacc 164  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||| ||||||||| |    
T  33763373 ggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatc 33763274  T
Q  165 atcccctcactctaaaatttttgtaacc 192  Q
    |||||||||| ||||||||| |||||||    
T  33763273 atcccctcaccctaaaatttctgtaacc 33763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 33762646 - 33762532
Alignment:
Q  78 ctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactct 177  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||| ||||||||||| ||    
T  33762646 ctagtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccct 33762547  T
Q  178 aaaatttttgtaacc 192  Q
    |||||||||||||||    
T  33762546 aaaatttttgtaacc 33762532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 35371833 - 35371755
Alignment:
Q  96 ggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcac 174  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcac 35371755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 44438670 - 44438562
Alignment:
Q  64 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcac 163  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |   |||||||||||||||||||| ||||||| ||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtac 44438571  T
Q  164 catcccctc 172  Q
    |||||||||    
T  44438570 catcccctc 44438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 35618034 - 35618115
Alignment:
Q  111 ctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||| ||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaaattttgtaacc 35618115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 17015192 - 17015260
Alignment:
Q  124 ctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaatttatgtaacc 17015260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 15034455 - 15034501
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggt 98  Q
    |||| ||||||| |||||||||||  |||||||||||||||||||||    
T  15034455 ccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 46494530 - 46494390
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46494530 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctacctt 46494431  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaacc 192  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  46494430 ggactggggcaccatcccctcaccctaaaaattttgtaacc 46494390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 51066493 - 51066632
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51066493 ccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 51066592  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| ||||||  ||||||||    
T  51066593 ggactggggcaccatcccctcaccctaaaaaatttgtaac 51066632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 36192542 - 36192673
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  36192542 cgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttg 36192641  T
Q  153 gactggggcaccatcccctcactctaaaattt 184  Q
    |||||||||||||||||||||| |||||||||    
T  36192642 gactggggcaccatcccctcaccctaaaattt 36192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 51714097 - 51713958
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  51714097 ccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgcttt 51713998  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    | ||||||||||||||||||||| ||||||||||||||||    
T  51713997 gaactggggcaccatcccctcaccctaaaatttttgtaac 51713958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 32139164 - 32139303
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||    
T  32139164 ccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgcctt 32139263  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||||||||||||||||| |||| ||||| ||||| ||||    
T  32139264 ggactggggcaccatcccttcaccctaaattttttataac 32139303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 7173717 - 7173584
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||  ||||| || |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||    
T  7173717 ccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgtt 7173618  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||||||||||||||||||||| ||||||||||    
T  7173617 ggactggggcaccatcccctcaccctaaaatttt 7173584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 30970516 - 30970383
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||| ||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  30970516 ccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctacctt 30970417  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
     |||||||||||||||||||||| ||||||||||    
T  30970416 agactggggcaccatcccctcaccctaaaatttt 30970383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 50905748 - 50905887
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||    
T  50905748 ccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgcctt 50905847  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    | |||||||||||||||  |||| ||||||||||||||||    
T  50905848 gaactggggcaccatcctttcaccctaaaatttttgtaac 50905887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 39863910 - 39863777
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||    
T  39863910 ccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctacctt 39863811  T
Q  152 ggactggggcaccatcccctcactctaaaatttt 185  Q
    |||||| | ||| |||||||||| ||||||||||    
T  39863810 ggactgagacactatcccctcaccctaaaatttt 39863777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 8740448 - 8740550
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  8740448 ccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgcctt 8740547  T
Q  152 gga 154  Q
    |||    
T  8740548 gga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 29576444 - 29576554
Alignment:
Q  81 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaa 180  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaa 29576543  T
Q  181 atttttgtaac 191  Q
    |||||||||||    
T  29576544 atttttgtaac 29576554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 55231715 - 55231827
Alignment:
Q  80 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaa 179  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaa 55231814  T
Q  180 aatttttgtaacc 192  Q
    |||||||||||||    
T  55231815 aatttttgtaacc 55231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 2570216 - 2570341
Alignment:
Q  67 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccat 166  Q
    ||||||| ||||| |||||||||||||||||||||| ||| || | || ||| || |||||||| |||||| ||||||||||||||||||||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccat 2570315  T
Q  167 cccctcactctaaaatttttgtaacc 192  Q
    |||||||| |||||||||||||||||    
T  2570316 cccctcaccctaaaatttttgtaacc 2570341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 47627127 - 47626986
Alignment:
Q  52 ccgagagaacccgggttcgag--ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcc 149  Q
    |||||||||||||| ||||||  |||| |||||||||||| |||||||||||||||| ||||| | ||| | |||||||| | |||||||||||||||||    
T  47627127 ccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccctgcc 47627028  T
Q  150 ttggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||||||||  ||||||| |||||| ||||||||||||||||    
T  47627027 ttggactggaacaccatctcctcaccctaaaatttttgtaac 47626986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 676766 - 676867
Alignment:
Q  90 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgta 189  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||  |||||||||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaatttttgta 676865  T
Q  190 ac 191  Q
    ||    
T  676866 ac 676867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 22304167 - 22304090
Alignment:
Q  108 tacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttt 185  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaatttt 22304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 41523423 - 41523536
Alignment:
Q  78 ctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactct 177  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||  |||||| |||| ||||||||| |||  ||    
T  41523423 ctagtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatcccttcatcct 41523522  T
Q  178 aaaatttttgtaac 191  Q
    |||| |||||||||    
T  41523523 aaaaattttgtaac 41523536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 2294841 - 2294719
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    ||||||||| ||||||||||   |||||||||||||||||| ||||||||||||||||      ||||| || ||||||||||| |||||| |||||||     
T  2294841 cgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgcctta 2294748  T
Q  153 gactggggcaccatcccctcactctaaaa 181  Q
    |||||||||||||||||||||| ||||||    
T  2294747 gactggggcaccatcccctcaccctaaaa 2294719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 4080651 - 4080544
Alignment:
Q  85 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaattt 184  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| | ||| |||||| ||| |||||| ||| ||||||||||||| |  ||||||||    
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctcgccttaaaattt 4080552  T
Q  185 ttgtaacc 192  Q
    ||||||||    
T  4080551 ttgtaacc 4080544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 50399763 - 50399634
Alignment:
Q  63 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 162  Q
    ||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| ||||||||||  || |||||| || |||||||   |||||    
T  50399763 cgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcctaaatgtcttctctaccttggataagggca 50399664  T
Q  163 ccatcccctcactctaaaatttttgtaacc 192  Q
     ||||| ||||| ||||| ||| |||||||    
T  50399663 tcatccgctcaccctaaattttatgtaacc 50399634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 51279154 - 51279035
Alignment:
Q  63 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggca 162  Q
    |||||| ||||||  ||| ||| ||| ||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||  ||||||| |  ||||    
T  51279154 cgggtttgagccctactaatgcttttagagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggca 51279055  T
Q  163 ccatcccctcactctaaaat 182  Q
    |||||||||||| |||||||    
T  51279054 ccatcccctcaccctaaaat 51279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 22423378 - 22423479
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    |||||| | ||| ||||||||| | |||| ||||||||||||||||||||||| ||| |||||||||| |||||| |  |||||||||||||||| ||||    
T  22423378 gagagatctcggattcgagcccggttagtacctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgctttgg 22423477  T
Q  154 ac 155  Q
    ||    
T  22423478 ac 22423479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 23084530 - 23084459
Alignment:
Q  119 gtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaatttttgtaa 190  Q
    |||||||||||| ||||||||||||||| ||||| ||||||| |||||| |||||| |||||| ||||||||    
T  23084530 gtgctctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaaattttgtaa 23084459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 737 - 818
Target Start/End: Complemental strand, 30909583 - 30909502
Alignment:
Q  737 cagatttaagctgcattttgcacagatgaaatttgaaggactcctcatacaccacaagatgagatgagagaaggtatgagct 818  Q
    |||||| ||||||||||| |||||||||||||| |||| ||||||| |||||||||||| || ||||| | ||| |||||||    
T  30909583 cagattcaagctgcatttcgcacagatgaaattcgaagaactcctcctacaccacaagacgaaatgagggcaggaatgagct 30909502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 37990663 - 37990606
Alignment:
Q  116 taagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 173  Q
    ||||| ||||||||||| |||| |||||||| ||||||||||||||||||| ||||||    
T  37990663 taagtactctttgagcctgaagatcttccctaccttggactggggcaccattccctca 37990606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 40012548 - 40012646
Alignment:
Q  87 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaattttt 186  Q
    |||||||||||||||||||| | ||||||| ||||||| ||||| |  |||||||||||| | ||||||| || |||| ||| ||||| ||||| |||||    
T  40012548 ttggagggaggtaaatgtaaatccctttgtgagtgctc-ttgagtcataaggtcttccctacgttggactaggacaccgtcctctcacactaaatttttt 40012646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 51066240 - 51066283
Alignment:
Q  138 gtcttccctgccttggactggggcaccatcccctcactctaaaa 181  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcaccctaaaa 51066283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 6e-61; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 35163882 - 35163743
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35163882 ccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 35163783  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  35163782 ggactggggcaccatcccctcaccctaaaatttttgtaac 35163743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 20685346 - 20685465
Alignment:
Q  73 ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20685346 ccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttc 20685445  T
Q  173 actctaaaatttttgtaacc 192  Q
    || |||||||||||||||||    
T  20685446 accctaaaatttttgtaacc 20685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 19686957 - 19686820
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| |    
T  19686957 gagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttag 19686858  T
Q  154 actggggcaccatcccctcactctaaaatttttgtaac 191  Q
    ||||||||| ||||||||||| ||||||||| ||||||    
T  19686857 actggggcatcatcccctcaccctaaaatttctgtaac 19686820  T

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Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 2711866 - 2711733
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||| |||||| || |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2711866 ccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgcctt 2711767  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaac 191  Q
    |||      |||||||||||||| ||||||||||||||||    
T  2711766 gga------caccatcccctcaccctaaaatttttgtaac 2711733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 17948702 - 17948814
Alignment:
Q  74 cccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 173  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  17948702 cccgctagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctca 17948801  T
Q  174 ctctaaaattttt 186  Q
    |  ||||||||||    
T  17948802 ccttaaaattttt 17948814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 14505655 - 14505519
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgcctt 151  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |  |||||| || ||||| |||||| ||||||    
T  14505655 ccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaa-tacctttgtaaatattctttgggcgcgaagatcttccgtgcctt 14505557  T
Q  152 ggactggggcaccatcccctcactctaaaatttttgtaa 190  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  14505556 ggactggggcaccatcccctcac-ctaaaatttttgtaa 14505519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 15070152 - 15070247
Alignment:
Q  79 tagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcac 174  Q
    |||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15070152 tagtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcac 15070247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 14496352 - 14496406
Alignment:
Q  52 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14496352 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 24336640 - 24336718
Alignment:
Q  77 gctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggac 155  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||| | |||||||| |||| |||||||||||||||||    
T  24336640 gctagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 117; Significance: 4e-59; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 107822 - 107691
Alignment:
Q  53 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttg 152  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  107822 cgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttg 107723  T
Q  153 gactggggcaccatcccctcactctaaaatttt 185  Q
    |||||||||||||||||||||| ||||||||||    
T  107722 gactggggcaccatcccctcac-ctaaaatttt 107691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 7099 - 6994
Alignment:
Q  54 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttgg 153  Q
    ||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttgg 7000  T
Q  154 actggg 159  Q
    ||||||    
T  6999 actggg 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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