View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17306_high_4 (Length: 313)
Name: NF17306_high_4
Description: NF17306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17306_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 28119200 - 28118898
Alignment:
| Q |
1 |
attacatcccttacatctcaatcaatctacttacaacatattttaattaatattacggctacattacatatatat-----catcactcatcaacacagtt |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
28119200 |
attacatcccttacatctcaatcaatctacttacaacatattttaattaatattacggctacattacatatatatattatcatcactcatcgacacagtt |
28119101 |
T |
|
| Q |
96 |
agctataaaagttcaataatttcatcatcacaaaaaatactgattaatgtctcatcaacaaagtaatttgttagagacacaaacacatcctttgattctg |
195 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28119100 |
agctataaaagttcaataatttcaacatcacaaaaaatactgattaatgtctcatcaacaaagtaatttgttagagacacaaacacatcctttgattctg |
28119001 |
T |
|
| Q |
196 |
tggggaactagcacatcgtaggacacttaggaaaagatgttcatcacaaggaatacatagttttgaatcagccatgaaatcatactcttcttgagcttga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28119000 |
tggggaactagcacatcgtaggacacttaggaaaagatgttcatgacaaggaatacatagttttgaatcagccatgaaatcatactcttcttgagcttga |
28118901 |
T |
|
| Q |
296 |
tcc |
298 |
Q |
| |
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||| |
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| T |
28118900 |
tcc |
28118898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 41010891 - 41010967
Alignment:
| Q |
218 |
acacttaggaaaagatgttcatcacaaggaatacatagttttgaatcagccatgaaatcatactcttcttgagcttg |
294 |
Q |
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||||| |||||||||||||||| ||| |||||||| ||||| ||||| || ||||||||||| |||||| ||||||| |
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| T |
41010891 |
acactaaggaaaagatgttcattacatggaatacaaagtttagaatctgcaatgaaatcatattcttctcgagcttg |
41010967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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