View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17306_high_5 (Length: 286)
Name: NF17306_high_5
Description: NF17306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17306_high_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 33815781 - 33815514
Alignment:
| Q |
19 |
aactggtctttgccgttgtcttgatgatcctggaatctgtaaggatcgtgtagtagattcattcacctttctttaaacacaaatatattatggttaatta |
118 |
Q |
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| T |
33815781 |
aactggtctttgccgttgtcttgatgatccaggaatctgtaagaatcatgtagtagattcattcacctttctttaaacacaaatatattatggttaatta |
33815682 |
T |
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| Q |
119 |
cnnnnnnnccttttctaattgaataggtttggtcacttgcttctgcccttgtgttacttttggattgatagcagagatagtggataaaggcaattcaagt |
218 |
Q |
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| T |
33815681 |
ctttttttccttttctaattgaataggtttggtcacttgcttctgcccttgtgttacttttggattgatagcagagatagtggataaaggcaattcaagt |
33815582 |
T |
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| Q |
219 |
aagtaagcttttctataaaatttaggcaaaattaattgtgttctcttaacttaattttaagtaatatt |
286 |
Q |
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| T |
33815581 |
aagtaagcttttctataaaatttaggcaaaattaattgtgttctcttaacttaattttaagtagtatt |
33815514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 33810552 - 33810295
Alignment:
| Q |
19 |
aactggtctttgccgttgtcttgatgatcctggaatctgtaaggatcgtgtagtagattcattcacctttctttaaa-cacaaatatattatggttaatt |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |
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| T |
33810552 |
aactcgtctttgccgttgtcttgatgatcctggaatctgtaaggatcgtgtagtagattcattcac-tttctttaaaacacatatatattatggttaatt |
33810454 |
T |
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| Q |
118 |
acnnnnnnnccttttctaattgaataggtttggtcacttgcttctgcccttgtgttacttttggattgatagcagagatagtggataaaggcaattcaag |
217 |
Q |
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| T |
33810453 |
acttttttttcctt-ctaattgacaaggtttggtcacttgcttctgcccttgtgttacttttggaatgatagcagagatagtagacaaaggcaattcaag |
33810355 |
T |
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| Q |
218 |
taagtaagcttttctataaaatttaggcaaaattaa--ttgtgttctcttaacttaattt |
275 |
Q |
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||||||||||||| ||||||||||||| |||||||| ||||| || ||||||||||||| |
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| T |
33810354 |
taagtaagcttttatataaaatttaggaaaaattaatcttgtggtcccttaacttaattt |
33810295 |
T |
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