View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17306_high_6 (Length: 244)
Name: NF17306_high_6
Description: NF17306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17306_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 15647561 - 15647778
Alignment:
| Q |
20 |
ctcatttccttcatgtctactctagtacgcaccaaagtaaaattccaatccaacaaatagacattatcagagttggaggagtagctcaaccnnnnnnnct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15647561 |
ctcatttccttcatgtctactctagtacgcaccaaagtaaaattccaatccaacaaatagacattatcagagttggaggagtagctcaacctttttttct |
15647660 |
T |
|
| Q |
120 |
ttatagcccgtggcactcaaaaggtgtgtgtattttatatggtgacccttacatctcgttaagagatgaaaacgaaaaatggaatgtatgttttgatttt |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15647661 |
ttatagccagtggcactcaaaaggtgtgtgtattttatatggtgacccttacatctctttaagagatgaaaacgaaaaatggaatgtatgttttgatgtt |
15647760 |
T |
|
| Q |
220 |
aaataatgatgatgatgt |
237 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
15647761 |
aaataatgatgttgatgt |
15647778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 25933455 - 25933499
Alignment:
| Q |
22 |
catttccttcatgtctactctagtacgcaccaaagtaaaattcca |
66 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||| |||||||| |
|
|
| T |
25933455 |
catttccttcatgtctactctagtatgcactatagttaaattcca |
25933499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University