View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17306_low_3 (Length: 329)
Name: NF17306_low_3
Description: NF17306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17306_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 42154710 - 42154997
Alignment:
| Q |
30 |
tagtaattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatggactagtaaagattgacaccatttcat |
129 |
Q |
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| T |
42154710 |
tagtaattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatgggctagaaaagattgacaccatt-cat |
42154808 |
T |
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| Q |
130 |
atttttggtta-taaa--ttacaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaat |
226 |
Q |
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|||||||||| | || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42154809 |
atttttggtttgtgaacttttaaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaat |
42154908 |
T |
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| Q |
227 |
accaagtatcgagtaattataaaggtattgtaatttatctcataaatagagcttggaagaatcaaatactctagcataccttttctattc |
316 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42154909 |
actaagtatcaagtaattataaaggtattgtaatttatctcataaatagagcttggaag-atcaaatactctagcataccttttctattc |
42154997 |
T |
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