View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17307_high_5 (Length: 227)
Name: NF17307_high_5
Description: NF17307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17307_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 37627284 - 37627505
Alignment:
| Q |
6 |
actaggtacattattataaattaaccatgctaaactaaactttatgttttgcagatgggaccttgatggaatggagcaacttcctcaatacatgaagata |
105 |
Q |
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| T |
37627284 |
actaggtacattattataaattaaccatgctaaactaaactttatgttttgcagatgggaccttgatggaatggagcaacttccagaatacatgaagata |
37627383 |
T |
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| Q |
106 |
tgctatatggcattatataacaccacaaatgaaattgcatatagaattcaaaaagaacatggactaactgttgtttcttgcttgnnnnnnncagtaagaa |
205 |
Q |
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| T |
37627384 |
tgctatatggcattatataacaccacaaatgaaattgcatatagaattcaaaaagaacatggactaactgttgtttcttgcttgaaaaaaacagtaagaa |
37627483 |
T |
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| Q |
206 |
tatgaatatccaatatctattt |
227 |
Q |
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| T |
37627484 |
tatgaatatccaatatctattt |
37627505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 37618883 - 37619054
Alignment:
| Q |
18 |
attataaattaaccatgctaaactaaactttatgttttgcagatgggaccttgatggaatggagcaacttcctcaatacatgaagatatgctatatggca |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |
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| T |
37618883 |
attataaattaaccatgctaaactgaactttatgttttgcaggtgggaccttgatgcaatggatcaacttccagaatacatgaagatatgctatatggca |
37618982 |
T |
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| Q |
118 |
ttatataacaccacaaatgaaattgcatatagaattcaaaaagaacatggactaactgttgtttcttgcttg |
189 |
Q |
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| T |
37618983 |
ttatataacaccacaaatgaaattgcatacaaaatccaaaaagaacatggactaactgttgtttcttacttg |
37619054 |
T |
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