View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17307_low_1 (Length: 570)
Name: NF17307_low_1
Description: NF17307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17307_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 180357 - 180898
Alignment:
| Q |
16 |
ctttgttctcaatagacttggtgccgaatataatgatatcgctgcctccatttgcacacgccaacacccttttacctttaagaagcttcatagccatctt |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
180357 |
ctttgttctcaatagacttggtgtcgaatataatgatatcactgcctccattcgcacacgccaacacccttttaccttcgagaagcttcatagccctctt |
180456 |
T |
|
| Q |
116 |
ctcgcacatgaggactacctgcgtcgagaagttgttcaggttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagct |
215 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180457 |
ctcgcacatgaggactacatgcgtcgagaagctgttcaggttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagct |
180556 |
T |
|
| Q |
216 |
caaaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaacta |
315 |
Q |
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| T |
180557 |
cgaaagatgatggtatccttccaattccatccccggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaacta |
180656 |
T |
|
| Q |
316 |
tcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctgctctttccttggccatattgctaagtaatgtcctccg |
415 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180657 |
tcgtggtagaggtcgaggtttcaactcatgtggaaatagacttccaccaagatgtcaactctgctctttccttggccatattgctaagtaatgtcctccg |
180756 |
T |
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| Q |
416 |
ctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcctaactgggtgtttgacactggagccagtcatcgtataa |
515 |
Q |
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| T |
180757 |
ctgcggcaacgcaacaatcaaccaatggcaaatttcgcttctacttcacattcggctgctcctaactgggtgttcgacactagagccagtcatcatataa |
180856 |
T |
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| Q |
516 |
catcaaatctgaacaatatgcagcttcactccgaagatgatg |
557 |
Q |
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| T |
180857 |
catcaaatctgaacaatatgcagcttcactccgaatatgatg |
180898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 1700785 - 1701323
Alignment:
| Q |
17 |
tttgttctcaatagacttggtgccgaatataatgatatcgctgcctccatttgcacacgccaacacccttttacctttaagaagcttcatagccatcttc |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
1700785 |
tttgttctcaatggacttggtgccgaatataatgatattgctgcctccattcgcacacgccaacacccttttacctttgaggagcttcatagccatcttc |
1700884 |
T |
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| Q |
117 |
tcgcacatgaggactacctgcgtcgagaagttgttcaggttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagctc |
216 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1700885 |
tcgcacatgatgactacctgcgtcgagaagctgttcaggttgacattcaagtacctacagcgaatttcgctcatcacacctctccaaatcaacgcagctc |
1700984 |
T |
|
| Q |
217 |
aaaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaactat |
316 |
Q |
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||| |||||| |||||||||||||||||||| | || |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
1700985 |
aaaggatgatggtatccttccaattccatccacaggacgtggtaacaatttctctaaacaatcccagcaccatggatccaatactcgtgggtctaactat |
1701084 |
T |
|
| Q |
317 |
cttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctgctctttccttggccatattgctaagtaatgtcctccgc |
416 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |
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| T |
1701085 |
cgtggtagaggtcgaggtttcaactcacgtggaaatagacctccaccaagatgtcaactctgctctttgcttggccatattgctaagtattgtcctcagc |
1701184 |
T |
|
| Q |
417 |
tgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcctaactgggtgtttgacactggagccagtcatcgtataac |
516 |
Q |
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||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
1701185 |
tgctacaacgcaacaatcaaccagtggcaaatttcgcttctgcttcacattcggctgctcctaactgggtgttcgacacaggagccagtcatcatataac |
1701284 |
T |
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| Q |
517 |
atcaaatctgaacaatatgcagcttcactccgaagatga |
555 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| |
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| T |
1701285 |
atcaaatctgaacaatatgcagctgcactccgaatatga |
1701323 |
T |
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