View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17307_low_2 (Length: 494)
Name: NF17307_low_2
Description: NF17307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17307_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 43610309 - 43610696
Alignment:
| Q |
8 |
aatcaacttcaactttaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgccgaaatacgcatgtaacctcatcggcaagta |
107 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
43610309 |
aatcaactttaacttcaaatttctcgcctaagcccaaatcctcattaggcttcaccacaaattagatgttgaaatacacatgtaacctcatcggcaagta |
43610408 |
T |
|
| Q |
108 |
atcatatgcatcaggagaaacatgtacacactctataataaaatcctctcactcatctcattcataagctaatttgagtgtctaagttattgcacgttcc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
43610409 |
atcatatgcatcaggagaaacatgtacacactcta--ataaaatcctctctctcatctcattcataagctaatttgagtgtctaagtgattgcacattcc |
43610506 |
T |
|
| Q |
208 |
actctctccaatcattgtcctactcacaccgatgagctcagcttaactatcgtcctacgccgtgcactgcatcaactctgatcatcgatattgatctact |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43610507 |
actctctccaatcgttgtcctactcacaccgatgagctcagcttaactgtcgtcctacgccgtgcaccgcatcaactctgatcatcgatattgatctact |
43610606 |
T |
|
| Q |
308 |
tcagatcatgagctcgagaacttcccatccaacacctaaagaaaaactcaaccttctcgaacagtagcaaggttaaaagaagaagtccta |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43610607 |
tcagatcatgagctcgagaacttcccatccaacacctaaagaaaaactcgaccttctcgaacagtagcaaggttaaaagaagaagtccta |
43610696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 394 - 475
Target Start/End: Original strand, 43610804 - 43610885
Alignment:
| Q |
394 |
cctacatccttaaaaccttcattagcaagtcaatccctcaaacctggagtgcaacaaaacttaagaagtactataaagttag |
475 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43610804 |
cctacatccttaaaaccttcctcagcaagtcaatccctcaaacctggattgcaacaaaacttaagaagtactataaagttag |
43610885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University