View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17307_low_3 (Length: 335)

Name: NF17307_low_3
Description: NF17307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17307_low_3
NF17307_low_3
[»] chr4 (13 HSPs)
chr4 (17-304)||(32312635-32312928)
chr4 (220-292)||(55007907-55007979)
chr4 (69-132)||(34107798-34107861)
chr4 (230-292)||(30621260-30621322)
chr4 (220-272)||(20863820-20863872)
chr4 (220-276)||(30480300-30480356)
chr4 (224-276)||(34379580-34379632)
chr4 (69-168)||(4419205-4419304)
chr4 (237-292)||(21945704-21945759)
chr4 (69-132)||(30940834-30940897)
chr4 (97-132)||(43849450-43849485)
chr4 (220-292)||(25574985-25575057)
chr4 (220-292)||(53540451-53540523)
[»] chr1 (10 HSPs)
chr1 (220-292)||(43375647-43375719)
chr1 (220-276)||(25715375-25715431)
chr1 (220-292)||(52900691-52900763)
chr1 (221-292)||(8796370-8796441)
chr1 (77-132)||(31737425-31737480)
chr1 (220-292)||(8676911-8676986)
chr1 (260-304)||(12231513-12231558)
chr1 (220-292)||(478839-478910)
chr1 (220-292)||(36339853-36339924)
chr1 (220-292)||(52532665-52532737)
[»] chr8 (12 HSPs)
chr8 (220-293)||(24558643-24558716)
chr8 (220-292)||(24399838-24399910)
chr8 (223-289)||(41971842-41971908)
chr8 (220-292)||(35362699-35362771)
chr8 (225-292)||(17491708-17491775)
chr8 (221-292)||(28169553-28169624)
chr8 (230-293)||(30198325-30198388)
chr8 (109-147)||(6120947-6120985)
chr8 (220-285)||(33076292-33076357)
chr8 (99-132)||(40223505-40223538)
chr8 (237-293)||(35643672-35643728)
chr8 (220-292)||(35914650-35914722)
[»] chr7 (15 HSPs)
chr7 (220-292)||(38135262-38135334)
chr7 (220-292)||(47796201-47796273)
chr7 (220-292)||(28627982-28628054)
chr7 (43-119)||(7637625-7637697)
chr7 (69-168)||(27521413-27521512)
chr7 (237-292)||(28542010-28542065)
chr7 (220-293)||(36101826-36101899)
chr7 (220-292)||(27893612-27893684)
chr7 (69-132)||(21326940-21327003)
chr7 (69-168)||(40726546-40726645)
chr7 (69-127)||(25187038-25187096)
chr7 (220-292)||(1569177-1569249)
chr7 (69-149)||(19277235-19277315)
chr7 (220-292)||(26741943-26742015)
chr7 (220-276)||(34341444-34341500)
[»] chr3 (11 HSPs)
chr3 (220-293)||(40116387-40116460)
chr3 (220-292)||(29601053-29601125)
chr3 (220-292)||(23534619-23534691)
chr3 (220-292)||(29475847-29475919)
chr3 (69-149)||(53785651-53785731)
chr3 (43-132)||(44754-44841)
chr3 (222-292)||(40116519-40116589)
chr3 (74-123)||(4537628-4537677)
chr3 (99-132)||(13582482-13582515)
chr3 (220-292)||(36304127-36304199)
chr3 (98-154)||(51234587-51234643)
[»] chr6 (6 HSPs)
chr6 (220-292)||(8364717-8364789)
chr6 (220-291)||(34554-34625)
chr6 (69-132)||(32115660-32115723)
chr6 (69-125)||(959523-959579)
chr6 (220-292)||(31818692-31818764)
chr6 (220-292)||(24665972-24666044)
[»] chr2 (12 HSPs)
chr2 (220-288)||(19336942-19337010)
chr2 (229-292)||(37452284-37452347)
chr2 (220-292)||(26670929-26671001)
chr2 (69-132)||(13413293-13413356)
chr2 (69-132)||(17344580-17344643)
chr2 (99-132)||(41868010-41868043)
chr2 (220-292)||(9496027-9496099)
chr2 (99-147)||(20142812-20142860)
chr2 (220-292)||(23915742-23915814)
chr2 (220-292)||(33625247-33625319)
chr2 (220-292)||(38435113-38435185)
chr2 (220-292)||(42149709-42149781)
[»] chr5 (10 HSPs)
chr5 (220-286)||(418083-418149)
chr5 (94-130)||(16017140-16017176)
chr5 (220-292)||(29922445-29922517)
chr5 (220-283)||(32516725-32516788)
chr5 (69-168)||(37873704-37873803)
chr5 (220-289)||(14667935-14668004)
chr5 (220-292)||(6788228-6788300)
chr5 (220-292)||(9235208-9235280)
chr5 (260-292)||(28186864-28186896)
chr5 (99-127)||(38875610-38875638)
[»] scaffold0009 (1 HSPs)
scaffold0009 (69-122)||(103048-103101)
[»] scaffold0010 (1 HSPs)
scaffold0010 (220-292)||(160373-160445)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 32312928 - 32312635
Alignment:
Q  17 caagatacgccgctaattgtttttaaatggcaaaaccaatcctcttgaaaacaacataacattcatagatctagaacacacaacattgttatgcatgacc 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  32312928 caagatacgccgctaattctttttaaatggcaaaaccaatcctcctgaaaacaacacaacattcatagatctagaagacactacattgttatgcatgacc 32312829  T
Q  117 ttttgaactctttgtatcagatcaacgacctctaatgccatgaagccaaaagaccctttgcaatttgtatattaccaacaaccaagccttatcc------ 210  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  32312828 ttttgaactctttgtataagatcaacgacctctaaagccatgaagccaaaagaccctttgcaatttgtatattaccaacaaccaagccttatcccaccaa 32312729  T
Q  211 atgggttggcaaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaataactctcttatag 304  Q
    |||||||||| |  |   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32312728 atgggttggctacgtggatcataatattctatcattaaccacacttcagtccaactcattaatctcaaaatctttcttaataactctcttatag 32312635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 55007979 - 55007907
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||||||||||  |||||||| ||||| | ||| |||||||||||||||||| |||||||||||||||    
T  55007979 caaattacgtcataatgatctatcataaaccatatttcggtccaactcattaatctctaaatctttcttaata 55007907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 34107861 - 34107798
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||| ||||||||| ||||||| | ||| |||||||||||||||||| ||||||||||| ||||    
T  34107861 aacacaacattcatggatctaggagacataacattgttatgcatgactttttgaactctatgta 34107798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 30621260 - 30621322
Alignment:
Q  230 cataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||| ||||||||| ||||| | ||| ||||||| |||||||||| |||||||||||||||    
T  30621260 cataatgttctatcataaaccatatttcggtccaacacattaatctctaaatctttcttaata 30621322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 20863872 - 20863820
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaa 272  Q
    ||||||||| ||||||||||||||||| |||| | ||| ||||||||||||||    
T  20863872 caaattacgccataatattctatcattcaccatatttcggtccaactcattaa 20863820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 30480356 - 30480300
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctc 276  Q
    ||||||||||||||| |||||||||| ||||| | || ||||||| |||||||||||    
T  30480356 caaattacgtcataaaattctatcataaaccatattttagtccaattcattaatctc 30480300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 34379632 - 34379580
Alignment:
Q  224 ttacgtcataatattctatcattaaccacacttcagtccaactcattaatctc 276  Q
    ||||| |||||||||||||||| ||||| | ||| ||||||||||||||||||    
T  34379632 ttacgccataatattctatcataaaccatatttcggtccaactcattaatctc 34379580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 4419205 - 4419304
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgtatcagatcaacgacctctaatgccatgaagccaaaag 168  Q
    |||| ||||||||| || |||| | ||| ||||||||||||||| ||| |||||||||| ||||  || ||||| |||||| |||| | |||||| ||||    
T  4419205 aacacaacattcatggacctaggagacataacattgttatgcataaccctttgaactctatgtagaaggtcaacaacctctgatgctacgaagccgaaag 4419304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 21945704 - 21945759
Alignment:
Q  237 ttctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| ||||| | ||||||||||||||||||| || ||||||||| |||||    
T  21945704 ttctatcataaaccatatttcagtccaactcattaatttccaaatctttcctaata 21945759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 30940897 - 30940834
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||| |||||||||||| |||| | | |  ||||||||||||||||||||||||||||| ||||    
T  30940897 aacacaacattcatagacctaggatatatgacattgttatgcatgaccttttgaactctatgta 30940834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 43849485 - 43849450
Alignment:
Q  97 caacattgttatgcatgaccttttgaactctttgta 132  Q
    |||||||||||||||||||| |||||||||||||||    
T  43849485 caacattgttatgcatgaccatttgaactctttgta 43849450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 25575057 - 25574985
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||  || ||| ||||||||| ||||| | |||  ||||||||||||||||| | |||||||||||||    
T  25575057 caaattacaccacaatgttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaata 25574985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 53540523 - 53540451
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| | |||||| ||||||||| ||||| | ||  |||||||||||||||||| || |||||| |||||    
T  53540523 caaattatgccataatgttctatcataaaccatatttttgtccaactcattaatctccaagtctttcctaata 53540451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 43375647 - 43375719
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| |||||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||||||||||||    
T  43375647 caaattatgtcataatgttctatcatgaaccatatttcggtccaactcattaatctctaaatctttcttaata 43375719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 25715375 - 25715431
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctc 276  Q
    ||||||||| |||||||||||||||| ||||| | ||| || |||||||||||||||    
T  25715375 caaattacgccataatattctatcataaaccatatttcggttcaactcattaatctc 25715431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 52900691 - 52900763
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||| || |||| | ||||||||| ||||| | |||||||||||||||||||||| |||||| || |||||    
T  52900691 caaattccgccatagtgttctatcataaaccatatttcagtccaactcattaatctctaaatctgtcctaata 52900763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 8796441 - 8796370
Alignment:
Q  221 aaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||||| |||||| ||||||||| ||||| | |||| ||||| |||||||| || | |||||||||||||    
T  8796441 aaattacgccataatgttctatcataaaccatatttcaatccaagtcattaatatctagatctttcttaata 8796370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 31737480 - 31737425
Alignment:
Q  77 attcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||||| ||||||| | ||| ||||||| |||||||||||||||||||||| ||||    
T  31737480 attcatggatctaggaaacataacattgatatgcatgaccttttgaactctatgta 31737425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 8676911 - 8676986
Alignment:
Q  220 caaattacgtcataatattctatcattaaccac---acttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| | ||||||||||||||||  |||||   | ||| |||||||||||||||||| |||||||| ||||||    
T  8676911 caaattatgccataatattctatcatagaccaccatatttcggtccaactcattaatctctaaatcttttttaata 8676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 12231558 - 12231513
Alignment:
Q  260 tccaactcattaatctcgaaatctttcttaata-actctcttatag 304  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||    
T  12231558 tccaactcattaatctcgagatctttcttaatagtctctcttatag 12231513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 478910 - 478839
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| |||||| ||||||||||| ||||| |||||  ||||||||||||| ||| ||| ||||| |||||    
T  478910 caaattatgtcatagtattctatcat-aaccatacttccatccaactcattaacctctaaaactttcctaata 478839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 36339853 - 36339924
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||||| ||||||| || ||||||||||||   ||| ||||||||||||||| || ||||||||| |||||    
T  36339853 caaattacttcataatgttttatcattaaccatgtttctgtccaactcattaatttc-aaatctttcctaata 36339924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 52532665 - 52532737
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||| | ||   |||||||||||||| || ||||||||| |||||    
T  52532665 caaattacgccataatgttctatcataaaccatattttgttccaactcattaatttctaaatctttcctaata 52532737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 24558716 - 24558643
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaataa 293  Q
    |||||||||||||||| ||||||| |||||||    |||||||| |||||||||||| ||||||||||||||||    
T  24558716 caaattacgtcataatgttctatcgttaaccatgactcagtccagctcattaatctctaaatctttcttaataa 24558643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 24399838 - 24399910
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||| || ||||||||||||||||| ||||| | |||| ||||||||||||||||||| ||| |||||||||    
T  24399838 caaatgacatcataatattctatcataaaccatatttcaatccaactcattaatctcgagatccttcttaata 24399910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 41971842 - 41971908
Alignment:
Q  223 attacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttctta 289  Q
    |||| |||||||| ||||||||| ||| | | |||||||||||||||||||||| ||||||||||||    
T  41971842 attaagtcataatgttctatcataaacaatatttcagtccaactcattaatctctaaatctttctta 41971908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 35362699 - 35362771
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| |||||||||  |||| | ||||||||||||||||||| || ||||||||| |||||    
T  35362699 caaattacgccataatgttctatcatacaccatatttcagtccaactcattaatttccaaatctttcctaata 35362771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 17491708 - 17491775
Alignment:
Q  225 tacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||| |||||| ||||||||| ||||| | ||  |||||||||||||||||| || ||||||||||||    
T  17491708 tacgccataatgttctatcataaaccatattttggtccaactcattaatctccaagtctttcttaata 17491775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 28169624 - 28169553
Alignment:
Q  221 aaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||||  ||||||||| |||||| ||||| | || | ||||||||||||||||| ||||||||| |||||    
T  28169624 aaattacaccataatattttatcataaaccatatttgaatccaactcattaatctcaaaatctttcctaata 28169553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 30198325 - 30198388
Alignment:
Q  230 cataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaataa 293  Q
    |||||||||||||||| ||||| | | |  ||||||||||||||||| | ||||||||||||||    
T  30198325 cataatattctatcataaaccatattccgatccaactcattaatctcaatatctttcttaataa 30198388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 6120947 - 6120985
Alignment:
Q  109 gcatgaccttttgaactctttgtatcagatcaacgacct 147  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  6120947 gcatgaccttttgaactctttgtaggagatcaacgacct 6120985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 33076357 - 33076292
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatcttt 285  Q
    |||||||| |||||||||||||| || ||||| | ||  || ||||||||||||||| ||||||||    
T  33076357 caaattacatcataatattctattataaaccatattttggtacaactcattaatctctaaatcttt 33076292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 40223538 - 40223505
Alignment:
Q  99 acattgttatgcatgaccttttgaactctttgta 132  Q
    ||||||||||||||||||||||||||||| ||||    
T  40223538 acattgttatgcatgaccttttgaactctatgta 40223505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 35643672 - 35643728
Alignment:
Q  237 ttctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaataa 293  Q
    ||||||||| ||||| | |||  ||||||||||||||||| | ||||||||||||||    
T  35643672 ttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaataa 35643728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 35914650 - 35914722
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||| | ||  |||||||||||||||||  || |||||| |||||    
T  35914650 caaattacgccataatgttctatcataaaccatattttggtccaactcattaatcttcaagtctttcctaata 35914722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 38135262 - 38135334
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||||||||||||| | ||| | ||| |||||||||||||||||| |||||||| ||||||    
T  38135262 caaattacgccataatattctatcataacccatatttcggtccaactcattaatctctaaatcttttttaata 38135334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 47796201 - 47796273
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||||||||||||| ||||| | |||||||||||| |||||| || ||||||||| |||||    
T  47796201 caaattacgccataatattctatcataaaccatatttcagtccaacttattaatttctaaatctttcctaata 47796273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 28627982 - 28628054
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||||| ||   ||||||||||||||||| ||||||||| |||||    
T  28627982 caaattacgccataatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttcctaata 28628054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 7637697 - 7637625
Alignment:
Q  43 atggcaaaaccaatcctcttgaaaacaacataacattcatagatctagaacacacaacattgttatgcatgaccttt 119  Q
    ||||||||| |||||||||||||||    |  ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  7637697 atggcaaaatcaatcctcttgaaaa----actacattcatagacctagaagacacaacattgttatgcatgaacttt 7637625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 27521413 - 27521512
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgtatcagatcaacgacctctaatgccatgaagccaaaag 168  Q
    |||| ||||||||||||  ||| | |||  ||||||||||||||||||||||||||||| ||||  || ||||| |||||| |||| | ||| |||||||    
T  27521413 aacacaacattcatagacttaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccaaaag 27521512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 28542010 - 28542065
Alignment:
Q  237 ttctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| ||||| | |||| ||||||||||||||||| |||||||||||||||    
T  28542010 ttctatcataaaccatagttcaatccaactcattaatctctaaatctttcttaata 28542065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 36101826 - 36101899
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaataa 293  Q
    |||||||||||||||| ||||||||| ||||| | ||   ||||||||||||||||  ||||||||| ||||||    
T  36101826 caaattacgtcataatgttctatcataaaccatattttgatccaactcattaatctataaatctttcataataa 36101899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 27893612 - 27893684
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| | |||||| ||||||||| || || | ||| ||||| |||||||||||| |||||||||||||||    
T  27893612 caaattatgccataatgttctatcataaaacatatttcggtccagctcattaatctctaaatctttcttaata 27893684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 21327003 - 21326940
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||| ||||||||| || |||| | ||| ||||||| |||||||||||||||||||||| ||||    
T  21327003 aacacaacattcatggacctaggagacataacattgctatgcatgaccttttgaactctatgta 21326940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 40726645 - 40726546
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgtatcagatcaacgacctctaatgccatgaagccaaaag 168  Q
    |||| ||||||||| ||||||| | ||| | ||||||||||||| ||| |||| ||||| ||||  || ||||| |||||| |||| |||||||| ||||    
T  40726645 aacacaacattcatggatctaggagacatagcattgttatgcataaccctttggactctatgtagaaggtcaacaacctctgatgctatgaagccgaaag 40726546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 25187096 - 25187038
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactct 127  Q
    |||| ||||||||| ||||||| | |||  |||||| ||||||||||||||||||||||    
T  25187096 aacacaacattcatggatctaggagacatgacattgctatgcatgaccttttgaactct 25187038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 1569249 - 1569177
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| | |||| ||||||||| ||||| | ||   ||||||||||||||||| | |||||||||||||    
T  1569249 caaattacgccgtaatgttctatcataaaccatattttgatccaactcattaatctctagatctttcttaata 1569177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 19277235 - 19277315
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgtatcagatcaacgacctct 149  Q
    |||| ||||||||| || |||| | |||  |||||| |||||||||||||||||||||| ||||  || ||||| ||||||    
T  19277235 aacacaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctct 19277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 26741943 - 26742015
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||| | ||| |||||||||||| || || |||| |||| |||||    
T  26741943 caaattacgccataatgttctatcataaaccatatttcggtccaactcatttatttccaaatatttcctaata 26742015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 34341444 - 34341500
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctc 276  Q
    ||||||||| |||||| ||||||||| ||||| | |||| ||||||||||| |||||    
T  34341444 caaattacgccataatgttctatcataaaccatatttcaatccaactcattcatctc 34341500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 40116387 - 40116460
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaataa 293  Q
    ||||||||| |||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||| || ||||||    
T  40116387 caaattacgccataatgttctatcataaaccatatttcggtccaactcattaatctctaaatctatcctaataa 40116460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 29601125 - 29601053
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||||| ||||||| ||||||||| ||| | | || | ||||||||||||||||| |||||||||||||||    
T  29601125 caaattacatcataatgttctatcataaactatatttgaatccaactcattaatctctaaatctttcttaata 29601053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 23534619 - 23534691
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| || || | | |||||||||||||||||||| || |||||| |||||    
T  23534619 caaattacgccataatgttctatcataaatcatattacagtccaactcattaatctctaagtctttcctaata 23534691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 29475919 - 29475847
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||| | ||||||||| ||| | | |||| ||||||||||||||||| | |||||||||||||    
T  29475919 caaattacgccatagttttctatcataaacaatatttcaatccaactcattaatctctagatctttcttaata 29475847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 53785651 - 53785731
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgtatcagatcaacgacctct 149  Q
    |||||||||||||| || |||| | |||  |||||| |||||||||||||||||||||| ||||  || ||||| ||||||    
T  53785651 aacataacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctct 53785731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 44754 - 44841
Alignment:
Q  43 atggcaaaaccaatcctcttgaaaacaacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||||||||| ||||||  |||| ||||||  |||||||| || |||| | |||  |||||| |||||||||||||||||||||| ||||    
T  44754 atggcaaaacaaatccttgtgaacacaaca--acattcatggacctaggaaacatgacattgctatgcatgaccttttgaactctatgta 44841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 40116519 - 40116589
Alignment:
Q  222 aattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| || ||| ||||||||| ||||| | ||| |||||||||||||||||| |||||| || |||||    
T  40116519 aattacgccacaatgttctatcataaaccatatttcggtccaactcattaatctctaaatctatcctaata 40116589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 4537628 - 4537677
Alignment:
Q  74 aacattcatagatctagaacacacaacattgttatgcatgaccttttgaa 123  Q
    |||||||||||| |||||| ||||||||||| |||||||  |||||||||    
T  4537628 aacattcatagacctagaaaacacaacattgctatgcatacccttttgaa 4537677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 13582482 - 13582515
Alignment:
Q  99 acattgttatgcatgaccttttgaactctttgta 132  Q
    ||||||||||||||||||||||||||||| ||||    
T  13582482 acattgttatgcatgaccttttgaactctctgta 13582515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 36304199 - 36304127
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| | ||||||| ||||| | ||   ||||||||||||||||| | |||||||||||||    
T  36304199 caaattacgccataatgtcctatcataaaccatattttgatccaactcattaatctctagatctttcttaata 36304127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 51234587 - 51234643
Alignment:
Q  98 aacattgttatgcatgaccttttgaactctttgtatcagatcaacgacctctaatgc 154  Q
    ||||||||||||||| |||||||||||||| ||||  || ||||| |||||| ||||    
T  51234587 aacattgttatgcataaccttttgaactctatgtagaaggtcaacaacctctgatgc 51234643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 8364789 - 8364717
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| |||||   |||||||||||| |||||| || |||||||||||||||    
T  8364789 caaattacgccataatgttctatcataaaccatgtttcagtccaacttattaatttctaaatctttcttaata 8364717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 34554 - 34625
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaat 291  Q
    ||||||||| |||||| ||||||||| ||||| | |||| ||||||||||||||||  | ||||||||||||    
T  34554 caaattacgccataatgttctatcataaaccatatttcaatccaactcattaatctttagatctttcttaat 34625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 32115660 - 32115723
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||| ||||||||| || |||| | |||  ||||||||||||||||||||||||||||||||||    
T  32115660 aacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctttgta 32115723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 959523 - 959579
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaact 125  Q
    |||| ||||||||| || |||| | ||||||||||| ||||||||||||||||||||    
T  959523 aacacaacattcatggacctaggagacacaacattgctatgcatgaccttttgaact 959579  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 31818764 - 31818692
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||| ||||   ||||||||||||||||| ||| ||||| |||||    
T  31818764 caaattacgacataatgttctatcataaaccatactttgatccaactcattaatctccaaacctttcctaata 31818692  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 24666044 - 24665972
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| |||||||| ||||||||| ||||| | |||  ||||||||||| | ||| |||| ||||||||||    
T  24666044 caaattaagtcataatgttctatcataaaccatatttcgatccaactcattgacctctaaatatttcttaata 24665972  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 19336942 - 19337010
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttctt 288  Q
    ||||||||| |||||| ||||||||| ||||| | |||  ||||||||||||||||| |||||||||||    
T  19336942 caaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttctt 19337010  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 37452284 - 37452347
Alignment:
Q  229 tcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| ||||||||| ||||| | ||| |||||||||||||||||| || ||||||||||||    
T  37452284 tcataatgttctatcataaaccatatttctgtccaactcattaatctctaattctttcttaata 37452347  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 26671001 - 26670929
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||  ||| |||||||||||| || || | ||  |||||||||||||||||| |||||||||||||||    
T  26671001 caaattacaccattatattctatcataaatcatattttggtccaactcattaatctctaaatctttcttaata 26670929  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 13413293 - 13413356
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||| ||||||||| || |||| | |||  ||||||||||||||||||||||||||||| ||||    
T  13413293 aacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgta 13413356  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 17344580 - 17344643
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgta 132  Q
    |||| ||||||||| || |||| | |||  ||||||||||||||||||||||||||||| ||||    
T  17344580 aacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgta 17344643  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 41868043 - 41868010
Alignment:
Q  99 acattgttatgcatgaccttttgaactctttgta 132  Q
    ||||||||||||||||||||||||||||| ||||    
T  41868043 acattgttatgcatgaccttttgaactctatgta 41868010  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 9496099 - 9496027
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||| | ||   ||||||||||||| ||| |||||||||| ||||    
T  9496099 caaattacgccataatgttctatcataaaccatatttggatccaactcattaacctctaaatctttctgaata 9496027  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 20142860 - 20142812
Alignment:
Q  99 acattgttatgcatgaccttttgaactctttgtatcagatcaacgacct 147  Q
    ||||||||||| ||||||||||||||||| ||||| || ||||| ||||    
T  20142860 acattgttatgtatgaccttttgaactctatgtataaggtcaacaacct 20142812  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 23915742 - 23915814
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||| | ||||||||| ||||| | ||| ||||| |||||||||||| | || ||||||||||    
T  23915742 caaattacgccatagtgttctatcataaaccatagttctgtccacctcattaatctctagatttttcttaata 23915814  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 33625247 - 33625319
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||||| ||||||| ||||||||| ||||| | | |  ||||||||||||||||| | || ||||||||||    
T  33625247 caaattacttcataatgttctatcataaaccatattactttccaactcattaatctctagatatttcttaata 33625319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 38435185 - 38435113
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||| ||||| ||||| | |||  |||||| |||||||||| | |||||||||||||    
T  38435185 caaattacgccataatgttcaatcataaaccaaatttcgatccaacacattaatctctagatctttcttaata 38435113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 42149709 - 42149781
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||| | |||  |||| |||| ||||||| | |||||||||||||    
T  42149709 caaattacgccataatgttctatcataaaccatatttctatccagctcaataatctctagatctttcttaata 42149781  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 418083 - 418149
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttc 286  Q
    ||||||||| |||||| ||||||||| ||||||| ||   ||||||||||||||||| |||||||||    
T  418083 caaattacgccataatgttctatcataaaccacatttggatccaactcattaatctctaaatctttc 418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 16017140 - 16017176
Alignment:
Q  94 acacaacattgttatgcatgaccttttgaactctttg 130  Q
    ||||||||||| |||||||||||||||||||||||||    
T  16017140 acacaacattgctatgcatgaccttttgaactctttg 16017176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 29922517 - 29922445
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||| | |||||   ||||||||||||  |||||||| |||||||||||||||    
T  29922517 caaattacgccataatgttctatcgtaaaccaggtttcagtccaacttgttaatctctaaatctttcttaata 29922445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 32516788 - 32516725
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatct 283  Q
    |||||||||||||||||||||||||| ||||| | || | |||||||  |||||||| ||||||    
T  32516788 caaattacgtcataatattctatcataaaccatatttgaatccaacttgttaatctctaaatct 32516725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 37873803 - 37873704
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttgaactctttgtatcagatcaacgacctctaatgccatgaagccaaaag 168  Q
    |||| |||||||||||| ||||||  ||  |||||||| ||||||||| |||||||||| ||||  || ||||| ||||||  ||| | |||||||||||    
T  37873803 aacacaacattcatagacctagaagtcatgacattgttctgcatgaccctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaag 37873704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 14668004 - 14667935
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttctta 289  Q
    ||||||||  |||||| ||||||||| ||||| ||||   ||||||||||||||||| | ||||||||||    
T  14668004 caaattacaccataatgttctatcataaaccatacttggatccaactcattaatctctagatctttctta 14667935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 6788300 - 6788228
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    |||||||||  ||||| ||||||||| || || | ||||||||||||||||||| || || |||||| |||||    
T  6788300 caaattacgctataatgttctatcataaatcatatttcagtccaactcattaatttccaagtctttcctaata 6788228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 9235280 - 9235208
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||| | |||||| ||||||||| ||||| | |||  |||| |||||||||||| | |||||||||||||    
T  9235280 caaattatgccataatgttctatcataaaccatatttcgatccagctcattaatctctatatctttcttaata 9235208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 28186864 - 28186896
Alignment:
Q  260 tccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||||||||||| |||||||||||||||    
T  28186864 tccaactcattaatctctaaatctttcttaata 28186896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 38875610 - 38875638
Alignment:
Q  99 acattgttatgcatgaccttttgaactct 127  Q
    |||||||||||||||||||||||||||||    
T  38875610 acattgttatgcatgaccttttgaactct 38875638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 103048 - 103101
Alignment:
Q  69 aacataacattcatagatctagaacacacaacattgttatgcatgaccttttga 122  Q
    |||| ||||||||| || |||| | |||| ||||||||||||||||||||||||    
T  103048 aacacaacattcatggacctaggagacacgacattgttatgcatgaccttttga 103101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 160373 - 160445
Alignment:
Q  220 caaattacgtcataatattctatcattaaccacacttcagtccaactcattaatctcgaaatctttcttaata 292  Q
    ||||||||| |||||| ||||||||| ||||| | ||| ||| ||||||||||| ||  |||||||| |||||    
T  160373 caaattacgccataatgttctatcataaaccatatttcggtcgaactcattaatttcttaatctttcctaata 160445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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