View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17308_high_4 (Length: 363)
Name: NF17308_high_4
Description: NF17308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17308_high_4 |
 | |
|
| [»] scaffold0697 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 10639514 - 10639167
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaatccataaactatgcaagacatgttttattttaatattaatctatactattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
10639514 |
cataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacatattttatttttatattaatttatactattgtacctt |
10639415 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639414 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
10639315 |
T |
|
| Q |
201 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639314 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
10639215 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639214 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
10639167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 32716097 - 32716444
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaatccataaactatgcaagacatgttttattttaatattaatctatactattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
32716097 |
cataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgtacctt |
32716196 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
32716197 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggtaaaacataaatgaattgtaa |
32716296 |
T |
|
| Q |
201 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32716297 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
32716396 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32716397 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
32716444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 13340693 - 13341040
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaatccataaactatgcaagacatgttttattttaatattaatctatactattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13340693 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
13340792 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340793 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
13340892 |
T |
|
| Q |
201 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
13340893 |
atctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
13340992 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340993 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
13341040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 13330030 - 13330125
Alignment:
| Q |
253 |
ctatatctacttttgtcagcttccggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13330030 |
ctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
13330125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 26663315 - 26662968
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaatccataaactatgcaagacatgttttattttaatattaatctatactattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
26663315 |
cataaataataataccctatcataaataaacctgaagttaaaatccataaactatgcaagacatattttatttttatattaatttatactattgtacctt |
26663216 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663215 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
26663116 |
T |
|
| Q |
201 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26663115 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccagcacattgaccttgatgtaagtg |
26663016 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663015 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
26662968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 22903574 - 22903227
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaatccataaactatgcaagacatgttttattttaatattaatctatactattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
22903574 |
cataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgtacctt |
22903475 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903474 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
22903375 |
T |
|
| Q |
201 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903374 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
22903275 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903274 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
22903227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 5670226 - 5670573
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaatccataaactatgcaagacatgttttattttaatattaatctatactattgtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5670226 |
cataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgtacctt |
5670325 |
T |
|
| Q |
101 |
gaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670326 |
gaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgtaa |
5670425 |
T |
|
| Q |
201 |
atctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagtg |
300 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
5670426 |
atctggcgagcatatacctaacatatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtg |
5670525 |
T |
|
| Q |
301 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670526 |
ccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
5670573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 34149374 - 34149051
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaatcc-ataaactatgcaagacatgttttattttaatattaatctatactat-tgtacc |
98 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| ||| ||| ||||| |||| |||||||||| ||| |||| || ||| ||| | | | |||| |
|
|
| T |
34149374 |
cataaataataataccctatcacaaataaaattaaaattattttcctataaa-tatgtaagacatgttctatattaacatgaatttatgttgtgtatacc |
34149276 |
T |
|
| Q |
99 |
ttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaattgt |
198 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||||| || ||||| |||||||| |||||||| ||||| |
|
|
| T |
34149275 |
ttgaggaacccttaacccatttgttcgagaaatagcatttctgaggactctagaatcagcagctgaaccttcccacccaggcaacacatatataaattgc |
34149176 |
T |
|
| Q |
199 |
aaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaag |
298 |
Q |
| |
|
| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34149175 |
atatctggtgagcatacacccaacacgtttgttgctatctcacccttccttgttctgaatctagttttgtcagcttcgggcacattgaccttgatgtaag |
34149076 |
T |
|
| Q |
299 |
tgccatcaagagctcctaaacaatt |
323 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34149075 |
tgccatcaagagctcctaaacaatt |
34149051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 200 - 348
Target Start/End: Original strand, 5529 - 5677
Alignment:
| Q |
200 |
aatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagt |
299 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5529 |
aatctagtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttctggcacaatgaccttgatgtaagt |
5628 |
T |
|
| Q |
300 |
gccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5629 |
gccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtct |
5677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5377 - 5529
Alignment:
| Q |
1 |
cataaataataataccctatcataaataaaacaaaagttaaaa-tccataaactatgcaagacatgttttattttaatattaatctatactattgtacct |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||| || |
|
|
| T |
5377 |
cataaataataataccctgtcataaataaacctgaagttaaaaatccataaactatgcaagacatattttatttttatattaatttatactattgtatct |
5476 |
T |
|
| Q |
100 |
tgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctaga |
152 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5477 |
tgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctaga |
5529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 48943430 - 48943486
Alignment:
| Q |
267 |
gtcagcttccggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatt |
323 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48943430 |
gtcagcttcgggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatt |
48943486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University