View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17309_high_15 (Length: 354)
Name: NF17309_high_15
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 8057049 - 8057376
Alignment:
| Q |
17 |
caaaccaaactagagaccatggggaacactcttacttgtaaagcacaataaaaatcacttcaaaaaatcaatgatattaaatgcaatgttgtttagtcac |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8057049 |
caaaccaaactagagaccacggggaacactcttacttgtaaagcacaataaaaatcacttcaaaaaatcaatgatattaaatacaatgttgtttagtcac |
8057148 |
T |
|
| Q |
117 |
aaataaaattcaagtacgtgtacaccttctcgaaattgcagcaatacaaaagtgattatcacatcaaaggtagagagaatattataggcagtgctgttcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8057149 |
aaataaaattcaagtacgtgtacaccttctcgaaattgcagcaatacaaaagtgattatcacatcaaaggtagagagaatattataggcagtgctgttcc |
8057248 |
T |
|
| Q |
217 |
ctacaaagaagccacgtaccccttctttccagcaaatgcttaacaccttcttccttttcattggctatacccttcaattgtgggaccaatcacaatgccc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8057249 |
ctacaaagaagccacgtaccccttctttccagcaaatgcttaacaccttcttcattttcattggttatacccttcaattgtgggaccaatcacaatgccc |
8057348 |
T |
|
| Q |
317 |
taaatccagatacgccactttccctatg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8057349 |
taaatccagatacgccactttccctatg |
8057376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University