View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_high_31 (Length: 236)

Name: NF17309_high_31
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_high_31
NF17309_high_31
[»] chr4 (11 HSPs)
chr4 (1-226)||(28948426-28948644)
chr4 (1-226)||(22703070-22703288)
chr4 (1-226)||(22990829-22991047)
chr4 (99-221)||(22698733-22698848)
chr4 (99-221)||(22981682-22981797)
chr4 (99-221)||(22995269-22995384)
chr4 (95-178)||(56560508-56560591)
chr4 (95-178)||(24036214-24036297)
chr4 (95-179)||(16565539-16565623)
chr4 (95-179)||(15618844-15618928)
chr4 (129-174)||(52056997-52057042)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-226)||(200042-200260)
[»] chr8 (6 HSPs)
chr8 (99-221)||(19648194-19648309)
chr8 (95-178)||(193387-193470)
chr8 (95-178)||(720991-721074)
chr8 (95-178)||(882098-882181)
chr8 (95-178)||(30983223-30983306)
chr8 (95-178)||(44240122-44240205)
[»] chr1 (6 HSPs)
chr1 (99-221)||(4345989-4346104)
chr1 (95-178)||(46407488-46407571)
chr1 (95-178)||(50978939-50979022)
chr1 (102-178)||(35606336-35606412)
chr1 (95-179)||(35569906-35569990)
chr1 (137-177)||(50979027-50979067)
[»] chr5 (5 HSPs)
chr5 (99-221)||(22809984-22810099)
chr5 (95-178)||(33232457-33232540)
chr5 (95-178)||(7072032-7072115)
chr5 (95-179)||(22481515-22481599)
chr5 (1-38)||(22808666-22808703)
[»] chr3 (4 HSPs)
chr3 (99-217)||(7011653-7011764)
chr3 (95-178)||(51125383-51125466)
chr3 (95-178)||(52692542-52692625)
chr3 (122-179)||(16246819-16246876)
[»] chr2 (6 HSPs)
chr2 (99-221)||(23360942-23361058)
chr2 (95-178)||(13895999-13896082)
chr2 (95-178)||(14036616-14036699)
chr2 (95-178)||(14380107-14380190)
chr2 (95-179)||(5916944-5917028)
chr2 (95-179)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (95-178)||(21515703-21515786)
chr6 (95-178)||(30019220-30019303)
chr6 (95-179)||(16547456-16547540)
chr6 (102-180)||(17830767-17830845)
[»] chr7 (3 HSPs)
chr7 (95-180)||(37638703-37638788)
chr7 (95-180)||(10372714-10372799)
chr7 (134-179)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (102-173)||(6607-6678)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28948644 - 28948426
Alignment:
Q  1 gactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28948644 gactgcctcttccttctggtgtttcggtttgcaaacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatga 28948545  T
Q  101 ggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcc 200  Q
    |||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  28948544 ggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcc 28948452  T
Q  201 taaattcacaattaagacacaggttc 226  Q
    ||||||||||||||||||||||||||    
T  28948451 taaattcacaattaagacacaggttc 28948426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 22703288 - 22703070
Alignment:
Q  1 gactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22703288 gactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatga 22703189  T
Q  101 ggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcc 200  Q
    |||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  22703188 ggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcc 22703096  T
Q  201 taaattcacaattaagacacaggttc 226  Q
    |||||||||||||| |||||||||||    
T  22703095 taaattcacaattatgacacaggttc 22703070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22990829 - 22991047
Alignment:
Q  1 gactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22990829 gactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatga 22990928  T
Q  101 ggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcc 200  Q
    |||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  22990929 ggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatgcc 22991021  T
Q  201 taaattcacaattaagacacaggttc 226  Q
    |||||||||||||| |||||||||||    
T  22991022 taaattcacaattatgacacaggttc 22991047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 22698733 - 22698848
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 198  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22698733 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22698825  T
Q  199 cctaaattcacaattaagacaca 221  Q
    |||||||||||||||||||||||    
T  22698826 cctaaattcacaattaagacaca 22698848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 22981797 - 22981682
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 198  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22981797 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22981705  T
Q  199 cctaaattcacaattaagacaca 221  Q
    |||||||||||||||||||||||    
T  22981704 cctaaattcacaattaagacaca 22981682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 22995384 - 22995269
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 198  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  22995384 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg 22995292  T
Q  199 cctaaattcacaattaagacaca 221  Q
    |||||||||||||||||||||||    
T  22995291 cctaaattcacaattaagacaca 22995269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 56560508 - 56560591
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  56560508 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 56560591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 24036297 - 24036214
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24036297 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 24036214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 16565539 - 16565623
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| ||| | ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16565539 taatgaagtaatcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 15618844 - 15618928
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| ||||| ||||| ||||||| |||| || | |||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  15618844 taatgaagtattcaattactatcactcaagtttaggatgcacaattgaaaaaacttttggggtatggaagaatagatttgcaatt 15618928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 52057042 - 52056997
Alignment:
Q  129 aggtgcacaatagaaagaacttttggtgtatggaagaatagatttg 174  Q
    |||||||||||||||| ||||||| | ||||||||||| |||||||    
T  52057042 aggtgcacaatagaaataacttttagggtatggaagaacagatttg 52056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 200260 - 200042
Alignment:
Q  1 gactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  200260 gactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatga 200161  T
Q  101 ggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcc 200  Q
    |||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  200160 ggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcc 200068  T
Q  201 taaattcacaattaagacacaggttc 226  Q
    |||||||||||||| |||||||||||    
T  200067 taaattcacaattatgacacaggttc 200042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 19648194 - 19648309
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 198  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  19648194 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 19648286  T
Q  199 cctaaattcacaattaagacaca 221  Q
    |||||||||||||||||||||||    
T  19648287 cctaaattcacaattaagacaca 19648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 193387 - 193470
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  193387 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 193470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 720991 - 721074
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  720991 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 882098 - 882181
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  882098 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 30983306 - 30983223
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30983306 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 30983223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 44240122 - 44240205
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| |||| |||| | ||||||||||||||||||||| ||||||||||| | |||||||||    
T  44240122 taatgaagtatttaattattatcactcaagtttaagatacacaatagaaagaacttttggggtatggaagaacatatttgcaat 44240205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 4345989 - 4346104
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 198  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  4345989 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 4346081  T
Q  199 cctaaattcacaattaagacaca 221  Q
    |||||||||||||||||||||||    
T  4346082 cctaaattcacaattaagacaca 4346104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 46407488 - 46407571
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  46407488 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 46407571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 50979022 - 50978939
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  50979022 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 50978939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 35606336 - 35606412
Alignment:
Q  102 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  35606336 gtatttaattattatcactcaagtttaaggtgcacaatagaaagaactgttggggtatggaagaacagatttgcaat 35606412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 35569990 - 35569906
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  35569990 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaataaatttgcaatt 35569906  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 50979067 - 50979027
Alignment:
Q  137 aatagaaagaacttttggtgtatggaagaatagatttgcaa 177  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  50979067 aatagaaagaacttttggggtatggaagaacagatttgcaa 50979027  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 22809984 - 22810099
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 198  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  22809984 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 22810076  T
Q  199 cctaaattcacaattaagacaca 221  Q
     ||||||||||||||||||||||    
T  22810077 actaaattcacaattaagacaca 22810099  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 33232457 - 33232540
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33232457 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 33232540  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 7072115 - 7072032
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  7072115 taatgaagtatttaattattatcactcaaatttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 7072032  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 22481515 - 22481599
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  22481515 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 22481599  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22808666 - 22808703
Alignment:
Q  1 gactgcctcttccttctggtgtttcggtttgcagacat 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  22808666 gactgcctcttccttctggtgtttcggtctgcagacat 22808703  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 7011653 - 7011764
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg 198  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  7011653 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg 7011745  T
Q  199 cctaaattcacaattaaga 217  Q
    |||||||||||||||||||    
T  7011746 cctaaattcacaattaaga 7011764  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 51125466 - 51125383
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  51125466 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 51125383  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 52692542 - 52692625
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  52692542 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 52692625  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 16246876 - 16246819
Alignment:
Q  122 aagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||| |||| |||||||| ||||||||||||   | ||||||||||||||||||||||    
T  16246876 aagtttaagatgcacaattgaaagaacttttaaggcatggaagaatagatttgcaatt 16246819  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 23361058 - 23360942
Alignment:
Q  99 gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaac-ttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat 197  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||       |||||||||||||||||||||    
T  23361058 gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaactttttggtgtatgaaagaatag-------atttgcaattctacgacgcat 23360966  T
Q  198 gcctaaattcacaattaagacaca 221  Q
    | ||||||||||||||||||||||    
T  23360965 gactaaattcacaattaagacaca 23360942  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 13895999 - 13896082
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13895999 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 13896082  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 14036616 - 14036699
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14036616 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14036699  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 14380107 - 14380190
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14380107 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat 14380190  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 5917028 - 5916944
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5917028 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 5916944  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 36311597 - 36311681
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36311597 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 36311681  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 21515786 - 21515703
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  21515786 taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 21515703  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 30019220 - 30019303
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat 178  Q
    |||||| |||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  30019220 taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat 30019303  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 16547456 - 16547540
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16547456 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt 16547540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 17830845 - 17830767
Alignment:
Q  102 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 180  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17830845 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 17830767  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 37638703 - 37638788
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 180  Q
    |||||| ||||| ||||| ||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37638703 taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggtgtatggaagaatagatttgcaattt 37638788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 10372799 - 10372714
Alignment:
Q  95 taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt 180  Q
    |||||| |||||  |||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  10372799 taatgaagtattcgattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt 10372714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 12963342 - 12963387
Alignment:
Q  134 cacaatagaaagaacttttggtgtatggaagaatagatttgcaatt 179  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  12963342 cacaattgaaagaacttttggggtatggaagaatagatttgcaatt 12963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 6678 - 6607
Alignment:
Q  102 gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagattt 173  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  6678 gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagattt 6607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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