View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_high_33 (Length: 234)
Name: NF17309_high_33
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14948084 - 14947862
Alignment:
| Q |
1 |
taccttaccaacatagtattatattcccttggttgttatgttgctaaga-----tgagccctattactcattcattccaaagat-tttaggatattatca |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14948084 |
taccttaccaacatagtattatattcccttggttgttatgttgccaagacccattgagccctattactcattcattccaaagatctttaggatattatca |
14947985 |
T |
|
| Q |
95 |
tgcttgaagacattttccagccctatatttcgaagaacattgttgtctttcaacaaaagattttgcctgaattttccatatggtcaatttggaaagctcg |
194 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14947984 |
tgcttcaagacattttccagccctatatttcgaagaacatcgttgtctttcaacagaagattttgcctgaattttccatatggtcaatttggaaagctcg |
14947885 |
T |
|
| Q |
195 |
aaatgagattgcaaatgtttggt |
217 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
14947884 |
aaatgagattgcaaatgtttggt |
14947862 |
T |
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