View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_high_34 (Length: 234)
Name: NF17309_high_34
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 36710763 - 36710634
Alignment:
| Q |
1 |
attaataacatgtactagtaattatttactcttgtgtaaaagaaatccaaatacatttcattctacctatgaaaagggatctaattttcattgttcttcc |
100 |
Q |
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| T |
36710763 |
attaataacatgtactagtaattatctactcttgtgtaaaagaaatccaaatacatttcattctacctatgaaaaggaatctaattttcattgttcttcc |
36710664 |
T |
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| Q |
101 |
acaaaataaccacatgctatacagttaggt |
130 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36710663 |
acaaaataaccacatgctatacagttaggt |
36710634 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 36710592 - 36710542
Alignment:
| Q |
172 |
tatagactcgtgtctccaactatagtgatccatctttttatgtcctttttg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36710592 |
tatagactcgtgtctccaactatagtgatccatctttttatgtcctttttg |
36710542 |
T |
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