View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_high_35 (Length: 226)

Name: NF17309_high_35
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_high_35
NF17309_high_35
[»] chr1 (12 HSPs)
chr1 (7-226)||(13067674-13067895)
chr1 (7-143)||(13130384-13130520)
chr1 (7-143)||(13162077-13162213)
chr1 (23-147)||(13205011-13205135)
chr1 (9-147)||(13069690-13069828)
chr1 (7-143)||(13094955-13095091)
chr1 (43-152)||(30367641-30367750)
chr1 (41-147)||(13007740-13007846)
chr1 (24-145)||(13101542-13101663)
chr1 (7-121)||(14708007-14708121)
chr1 (95-147)||(13010793-13010845)
chr1 (26-134)||(13064735-13064843)
[»] chr6 (1 HSPs)
chr6 (7-141)||(31396176-31396310)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 13067674 - 13067895
Alignment:
Q  7 aagtgatattctacaagcacttcattccaaattatctatggaagctgcaaaaatgactccat--gttggtcatgaaaagaagttcaaggtagcccaagaa 104  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13067674 aagtgatattgtacaagcacttcattccaaattatctatggaagctgaaaaaatgactccatatgttggtcatgaaaagaagttcaaggtagcccaagaa 13067773  T
Q  105 aatctcgaccgattcttgtatgaaagcataacattttccaaacgcgaaaaacaagtaatattagagatagagttttataactgtttttacagttagttag 204  Q
    ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13067774 aatattgaacgattcttgtatgaaagcataacattttccaaacgcgaaaaacaagtaatattagagatagagttttataactgtttttacagttagttag 13067873  T
Q  205 ttttcagttttggttgttgagc 226  Q
    ||||||||||||||||||||||    
T  13067874 ttttcagttttggttgttgagc 13067895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 13130520 - 13130384
Alignment:
Q  7 aagtgatattctacaagcacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaa 106  Q
    |||||||||| |||| |||||||||||||| |  | |||||||| |||||||||| ||| |||||||||| || |||||||||||||| ||||||||| |    
T  13130520 aagtgatattatacaggcacttcattccaagtagtttatggaagttgcaaaaatggctcaatgttggtcaagagaagaagttcaaggttgcccaagaata 13130421  T
Q  107 tctcgaccgattcttgtatgaaagcataacattttcc 143  Q
    ||| |||||||||||||||||||| ||||||||||||    
T  13130420 tcttgaccgattcttgtatgaaagtataacattttcc 13130384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 13162213 - 13162077
Alignment:
Q  7 aagtgatattctacaagcacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaa 106  Q
    |||||||||| |||| |||||||||||||| |  | |||||||| |||||||||| ||| |||||||||| || |||||||||||||| ||||||||| |    
T  13162213 aagtgatattttacaggcacttcattccaagtagtttatggaagttgcaaaaatggctcaatgttggtcaagagaagaagttcaaggttgcccaagaata 13162114  T
Q  107 tctcgaccgattcttgtatgaaagcataacattttcc 143  Q
    ||| |||||||||||||||||||| ||||||||||||    
T  13162113 tcttgaccgattcttgtatgaaagtataacattttcc 13162077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 13205135 - 13205011
Alignment:
Q  23 gcacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaatctcgaccgattcttg 122  Q
    |||||||||||||| || |||||||||||| |||||||| |||||||||||||| ||||||||||| | || |||| |||||||||| |||||||||||     
T  13205135 gcacttcattccaagttttctatggaagctacaaaaatggctccatgttggtcaagaaaagaagttaagggaagccgaagaaaatcttgaccgattctta 13205036  T
Q  123 tatgaaagcataacattttccaaac 147  Q
    |||||||| ||||||||||||||||    
T  13205035 tatgaaagtataacattttccaaac 13205011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 13069690 - 13069828
Alignment:
Q  9 gtgatattctacaagcacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaatc 108  Q
    |||||||| |||  |||||||||||||| |||||| ||||||||||||||||| ||||||||| |||| ||||||||||| | || |||| |||||||||    
T  13069690 gtgatattgtaccggcacttcattccaagttatctttggaagctgcaaaaatggctccatgttcgtcaagaaaagaagttaagggaagccgaagaaaatc 13069789  T
Q  109 tcgaccgattcttgtatgaaagcataacattttccaaac 147  Q
    | ||||| |||||||||||| | ||||||||||||||||    
T  13069790 ttgaccgtttcttgtatgaaggtataacattttccaaac 13069828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 13095091 - 13094955
Alignment:
Q  7 aagtgatattctacaagcacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaa 106  Q
    ||||||| || |||| |||||||||||||| |  | |||||||| |||||||||| ||| |||||||||| || |||||||||||||| ||||||||| |    
T  13095091 aagtgattttttacaggcacttcattccaagtagtttatggaagttgcaaaaatggctcaatgttggtcaagagaagaagttcaaggttgcccaagaata 13094992  T
Q  107 tctcgaccgattcttgtatgaaagcataacattttcc 143  Q
    ||| |||||||||||||||||||| ||||||||||||    
T  13094991 tcttgaccgattcttgtatgaaagtataacattttcc 13094955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 30367641 - 30367750
Alignment:
Q  43 tatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaatctcgaccgattcttgtatgaaagcataacattttc 142  Q
    ||||||||||||| |||||  | | ||||||||| |||||||||| |||||||||  |||||||||| ||||||||||||||||||||  |||||||| |    
T  30367641 tatggaagctgcagaaatggtttcttgttggtcaagaaaagaagtacaaggtagctgaagaaaatcttgaccgattcttgtatgaaagtgtaacatttgc 30367740  T
Q  143 caaacgcgaa 152  Q
    ||||||||||    
T  30367741 caaacgcgaa 30367750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 13007846 - 13007740
Alignment:
Q  41 tctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaatctcgaccgattcttgtatgaaagcataacattt 140  Q
    ||||||||||||||||||||| ||| | |||||||| |||| |||||| |||| |||| || ||||||| ||| | |||||||||||||| |||||||||    
T  13007846 tctatggaagctgcaaaaatggctcgacgttggtcaagaaaggaagttaaaggaagccgaaaaaaatcttgacagtttcttgtatgaaagaataacattt 13007747  T
Q  141 tccaaac 147  Q
    |||||||    
T  13007746 tccaaac 13007740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 13101663 - 13101542
Alignment:
Q  24 cacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaatctcgaccgattcttgt 123  Q
    |||||||| |||| |||||||||||||||||||||||| ||| | ||||||||||||| |||| | | || |||| |||||||||| ||| | |||||||    
T  13101663 cacttcataccaagttatctatggaagctgcaaaaatggctcaacgttggtcatgaaaggaagctaagggaagccgaagaaaatcttgacaggttcttgt 13101564  T
Q  124 atgaaagcataacattttccaa 145  Q
    ||||||| || || ||||||||    
T  13101563 atgaaagtattacgttttccaa 13101542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 14708121 - 14708007
Alignment:
Q  7 aagtgatattctacaagcacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaa 106  Q
    |||||||||| |||| |||||| ||||||  || | ||||||||| ||||||||| ||| || || |  | || ||||| |||||||||||||| |||||    
T  14708121 aagtgatattgtacaggcactttattccatgttgtttatggaagcagcaaaaatggctcaatattagataagagaagaaattcaaggtagcccacgaaaa 14708022  T
Q  107 tctcgaccgattctt 121  Q
    |||||||||||||||    
T  14708021 tctcgaccgattctt 14708007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 13010845 - 13010793
Alignment:
Q  95 agcccaagaaaatctcgaccgattcttgtatgaaagcataacattttccaaac 147  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  13010845 agccgaagaaaatcttgaccgattcttgtatgaaagtataacattttccaaac 13010793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 13064735 - 13064843
Alignment:
Q  26 cttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaatctcgaccgattcttgtat 125  Q
    |||| |||||| || | ||||||||||||| ||||| |||||  ||||||| || |||||  |||| ||||| ||||||| ||| |||  ||||||| ||    
T  13064735 cttctttccaacttttgtatggaagctgcagaaatggctccaaattggtcaagagaagaaactcaaagtagctcaagaaagtcttgacaaattcttgcat 13064834  T
Q  126 gaaagcata 134  Q
    ||| |||||    
T  13064835 gaatgcata 13064843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 31396176 - 31396310
Alignment:
Q  7 aagtgatattctacaagcacttcattccaaattatctatggaagctgcaaaaatgactccatgttggtcatgaaaagaagttcaaggtagcccaagaaaa 106  Q
    ||||||||||||| | | |||||||||| | || | ||||||||||||| |||| | | | | ||||||| ||||||| || | ||||||||||||||||    
T  31396176 aagtgatattctataggaacttcattcctagttgtttatggaagctgcagaaataatttcttcttggtcaagaaaagaggtacgaggtagcccaagaaaa 31396275  T
Q  107 tctcgaccgattcttgtatgaaagcataacatttt 141  Q
    |||  |||||||||||||||| || ||||||||||    
T  31396276 tcttaaccgattcttgtatgacagtataacatttt 31396310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University