View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_high_4 (Length: 450)

Name: NF17309_high_4
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_high_4
NF17309_high_4
[»] chr3 (4 HSPs)
chr3 (13-439)||(1726392-1726809)
chr3 (276-355)||(13361622-13361701)
chr3 (276-355)||(13293506-13293585)
chr3 (22-84)||(13293218-13293280)
[»] chr7 (2 HSPs)
chr7 (224-352)||(4447384-4447512)
chr7 (237-439)||(10347322-10347524)
[»] chr6 (2 HSPs)
chr6 (132-368)||(17235652-17235888)
chr6 (262-319)||(25723558-25723615)
[»] chr4 (2 HSPs)
chr4 (282-355)||(11450232-11450305)
chr4 (276-324)||(12407100-12407148)
[»] chr8 (1 HSPs)
chr8 (231-368)||(17932256-17932393)
[»] chr2 (1 HSPs)
chr2 (282-324)||(22677941-22677983)
[»] chr1 (1 HSPs)
chr1 (274-324)||(23976337-23976387)
[»] scaffold0011 (1 HSPs)
scaffold0011 (262-315)||(67272-67325)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 1726392 - 1726809
Alignment:
Q  13 aaaatcattgagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaagggatatctactaagctcttcaagttgtt 112  Q
    |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  1726392 aaaagcattgagaatctaataagttacctcaagtatcatgagatggagcttgttggagatgaatccgctaagggaaatctactaagctcttcaagttgtt 1726491  T
Q  113 gagtcagaagagactctagatggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaagaagaaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||    
T  1726492 gagtcagaagagactctagatggagaatctgaagatgggttagatgctgaa---------tttctgaccaaaatattcaagtaccttaccaagaagaaaa 1726582  T
Q  213 atgtttccaactagaactagtggatctaaaggatcaggctacaaggatgagaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttca 312  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  1726583 atgtttccaactagaactagtggatctaaaggatcagactacaaggatgagaaggatgattagaagggtttcttcaacagcaagaaacctggtcacttca 1726682  T
Q  313 ttgctgattgtctagagttgcagacggacaagtcaaagaaggaaatctctaagaagtaaagattcaaaattagagtcaagaaaggtttcatgtcaacatg 412  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  1726683 ttgctgattgtctagagttgcagacgaacaagtcaaagaaggaaatctctaagaaataaagattcaaaattagattcaagaaaggtttcatgtcaacatg 1726782  T
Q  413 ggatgaacttgatgaagaaactgatga 439  Q
    |||||||||||||||||||||| ||||    
T  1726783 ggatgaacttgatgaagaaactaatga 1726809  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 13361701 - 13361622
Alignment:
Q  276 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 355  Q
    ||||||||||||  | ||||||||| || ||| ||||||||||||||||||||||| ||||  |||||||||||||||||    
T  13361701 aagggttgcttccgctgcaagaaacttggtcatttcattgctgattgtctagagttacagaaagacaagtcaaagaagga 13361622  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 13293506 - 13293585
Alignment:
Q  276 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 355  Q
    ||||||||||||  | ||||||||| || ||| ||||||||||| ||||||||||| ||||  ||||||| |||||||||    
T  13293506 aagggttgcttccgctgcaagaaacttggtcatttcattgctgactgtctagagttacagaaagacaagtgaaagaagga 13293585  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 13293218 - 13293280
Alignment:
Q  22 gagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaag 84  Q
    |||||||| ||||| |  ||||| | ||||||||| |||||||||||||||||||| ||||||    
T  13293218 gagaatctgataagctccctcaaatatcatgagattgagcttgttggagatgaacctgctaag 13293280  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 4447512 - 4447384
Alignment:
Q  224 tagaactagtggatctaaaggatcaggctacaaggatgagaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgt 323  Q
    ||||| |||| |||| |||||||| || ||||| |   |||| ||| || ||||||| ||||||||| ||||||||| ||||||||||||| |||| |||    
T  4447512 tagaagtagtagatcaaaaggatctggatacaaaggctagaaagataatcagaagggatgcttcaactgcaagaaacctgatcacttcattactgactgt 4447413  T
Q  324 ctagagttgcagacggacaagtcaaagaa 352  Q
    ||||||||||||| |||||||||||||||    
T  4447412 ctagagttgcagaaggacaagtcaaagaa 4447384  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 439
Target Start/End: Original strand, 10347322 - 10347524
Alignment:
Q  237 tctaaaggatcaggctacaaggatgagaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcaga 336  Q
    |||||||||||||| ||||| ||| ||||||||||    || |||||||||||  |||| |||| ||  ||||||||| |||| |||| |||||| | ||    
T  10347322 tctaaaggatcaggatacaaagataagaaggatgaccgaaaaggttgcttcaattgcaaaaaacttgtccacttcatttctgactgtccagagttactga 10347421  T
Q  337 cggacaagtcaaagaaggaaatctctaagaagtaaagattcaaaattagagtcaagaaaggtttcatgtcaacatgggatgaacttgatgaagaaactga 436  Q
     | |||||| |||||| |||| |||||||||| | |  |||||||  | |||||| ||| ||  |||| |||||||||| || ||| ||||| |||||||    
T  10347422 agaacaagttaaagaatgaaagctctaagaaggagaatttcaaaagcaaagtcaataaaagtcacatggcaacatgggaagatcttcatgaataaactga 10347521  T
Q  437 tga 439  Q
    |||    
T  10347522 tga 10347524  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 368
Target Start/End: Complemental strand, 17235888 - 17235652
Alignment:
Q  132 atggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttacc--aagaagaaaaatgtttccaactagaac 229  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||||||||| || | ||||||| |||  |||||| |||||||||  |  |||||     
T  17235888 atggagaatctgaagatga-ttagatgctaaagagatgacatttctgaccaaaagatatcagtacctgaccaaaagaag-aaaatgtttttaggtagaag 17235791  T
Q  230 tagtggatctaaaggatcaggctacaaggatgagaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagag 329  Q
    | ||  ||  ||||||||  | |||||| || |||| |||||| ||||||  | ||||||  ||||||||| || |||||| || |  || |  ||||||    
T  17235790 ttgtatataaaaaggatcgagttacaagtataagaaagatgatcagaaggaatacttcaattgcaagaaacctggtcactttatagacgacttcctagag 17235691  T
Q  330 ttgcagacggacaagtcaaagaaggaaatctctaagaag 368  Q
    ||||||| |||| || ||||||| |||||||||||||||    
T  17235690 ttgcagaaggacgagccaaagaaagaaatctctaagaag 17235652  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 25723558 - 25723615
Alignment:
Q  262 agaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctga 319  Q
    ||||||| ||| ||||||| ||||||||| ||||||||| || ||| |||||||||||    
T  25723558 agaaggaagatcagaaggggtgcttcaactgcaagaaacctggtcatttcattgctga 25723615  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 11450232 - 11450305
Alignment:
Q  282 tgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 355  Q
    ||||||||||||||||||| |||||| ||||||| |||||||| |||||| |||| ||||||||| ||||||||    
T  11450232 tgcttcaacagcaagaaacttgatcatttcattgttgattgtccagagttacagaaggacaagtcgaagaagga 11450305  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 12407100 - 12407148
Alignment:
Q  276 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtc 324  Q
    ||||| ||||||||| | ||||||| || ||||||||||||||||||||    
T  12407100 aagggatgcttcaactgtaagaaacctggtcacttcattgctgattgtc 12407148  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 368
Target Start/End: Original strand, 17932256 - 17932393
Alignment:
Q  231 agtggatctaaaggatcaggctacaaggatgagaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagt 330  Q
    ||||| || ||| ||||| ||||||||||| ||||||||||| |||||||||||||| || ||||||| | || |||| | ||| ||  ||||| ||| |    
T  17932256 agtgggtccaaatgatcaagctacaaggataagaaggatgatcagaagggttgcttccactgcaagaagcctggtcacgtgattacttgttgtccagatt 17932355  T
Q  331 tgcagacggacaagtcaaagaaggaaatctctaagaag 368  Q
    |||| | ||||||||  ||||| |||| ||||||||||    
T  17932356 tgcaaaaggacaagtgtaagaaagaaagctctaagaag 17932393  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 22677983 - 22677941
Alignment:
Q  282 tgcttcaacagcaagaaacatgatcacttcattgctgattgtc 324  Q
    ||||||||| ||||||||| || ||||||||||||||||||||    
T  22677983 tgcttcaactgcaagaaacttggtcacttcattgctgattgtc 22677941  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 23976337 - 23976387
Alignment:
Q  274 agaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtc 324  Q
    ||||||| ||||||||| ||||||||  || ||||||||||||||||||||    
T  23976337 agaagggatgcttcaactgcaagaaatctggtcacttcattgctgattgtc 23976387  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 67272 - 67325
Alignment:
Q  262 agaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattg 315  Q
    ||||||| ||| ||||||| ||||||||| ||||||| |||| |||||||||||    
T  67272 agaaggaagatcagaagggatgcttcaactgcaagaagcatgttcacttcattg 67325  T

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