View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_high_6 (Length: 436)
Name: NF17309_high_6
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 1959976 - 1959567
Alignment:
| Q |
16 |
atcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaaga |
115 |
Q |
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| T |
1959976 |
atcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaaga |
1959877 |
T |
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| Q |
116 |
taatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagatt |
215 |
Q |
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| T |
1959876 |
taatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagatt |
1959777 |
T |
|
| Q |
216 |
ggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataactttgtagcattccatcaagtaagaggacagcagtgatta |
315 |
Q |
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| T |
1959776 |
ggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattcaaataactttgtagcattccatcaagtaagaggacagcagtgatta |
1959677 |
T |
|
| Q |
316 |
agattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaagaccgattcccaattcgaccg |
415 |
Q |
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| T |
1959676 |
agattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaagaccgattcccaattcgacca |
1959577 |
T |
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| Q |
416 |
atctagtata |
425 |
Q |
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| T |
1959576 |
atctagtata |
1959567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 2023349 - 2023612
Alignment:
| Q |
16 |
atcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2023349 |
atcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaaga |
2023448 |
T |
|
| Q |
116 |
taatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2023449 |
taatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcctttgccatatttcaagatt |
2023548 |
T |
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| Q |
216 |
ggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataacttt |
279 |
Q |
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| T |
2023549 |
ggaaatttctgatacacacaataaaggtggtttaacatgtatgcaatataattaaaataacttt |
2023612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 425
Target Start/End: Original strand, 2023807 - 2023944
Alignment:
| Q |
285 |
attccatcaagtaagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctga |
384 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| | || || |
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| T |
2023807 |
attccatcaagtcagaggacagcaacaattaagattatagggatacaaacctattttcttgaggactacaagaaccttgtgaacatcatg---tacccga |
2023903 |
T |
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| Q |
385 |
ttataggtaagaccgattcccaattcgaccgatctagtata |
425 |
Q |
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| T |
2023904 |
ttatagggcagactgattcccaacttgactgatctagtata |
2023944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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