View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_high_8 (Length: 398)
Name: NF17309_high_8
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 8880560 - 8880188
Alignment:
| Q |
19 |
tcatgacataatggtgataaggtagtcctacatgtttct--gtgtatatatgagataaggtagttctatattagctgagattcccaaatgattttttggc |
116 |
Q |
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| T |
8880560 |
tcatgacataatggtgataaggtagtcctacatgtttttcagtgtatatatgagataaggtagttctatagtagctgagattcctaaatgattttttggt |
8880461 |
T |
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| Q |
117 |
acatttttatttgtgtatatcttataaaaatttaaaagtcaagacctattttagccgttgacgaaaaatccgagagccaattttgtccgttacccnnnnn |
216 |
Q |
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| T |
8880460 |
acaattttaattgtgtat--cttataaaattttaaaagtgaagacctattttagccgttgaggaaaaatccgagagccaattttgtccgttacccaaaaa |
8880363 |
T |
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| Q |
217 |
nntacaacatttagtccttcataaaaattaattggaacattttagtccctaattgaacatttaacgaaaaacttactctttttggtccaatttgtaatgt |
316 |
Q |
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| T |
8880362 |
aatacaacatttagtccttcataaaaactaattggaacattttagtccctaattgaacatttaacgaaaaacttactctttttggtccaatttgtaatgt |
8880263 |
T |
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| Q |
317 |
tatcatccatgttttgaatacaccttggactggtatttacatacgtgaacacaccatatcaccacaggttctgct |
391 |
Q |
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| T |
8880262 |
tatcatccatgttttgaatacaccttggactggtatttacatacgtgaacacaccttatcaccacatgttatgct |
8880188 |
T |
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