View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17309_low_1 (Length: 580)
Name: NF17309_low_1
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_1 |
 | |
|
| [»] scaffold0164 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0164 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 15933 - 15367
Alignment:
| Q |
1 |
atggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
15933 |
atggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgttgggtttttctctttcctgccttaaactgtaacaaactttggtga |
15834 |
T |
|
| Q |
100 |
acataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacacc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15833 |
acataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacacc |
15734 |
T |
|
| Q |
200 |
aaaaagagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataa |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15733 |
aaaa-gagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataa |
15635 |
T |
|
| Q |
300 |
aaatggaaggtgtgtaaaaggcaaacctcattgaatgttgataatgatgcaactcgaaccnnnnnnntctggcttcaatcaatcacaaaaacaacttaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15634 |
aaatggaaggtgtgtaaaaggcaaacctcattgaatgttgataatgttgcaactcgaaccaaaaaaatctggcttcaatcaatcacaaaaacaacttaaa |
15535 |
T |
|
| Q |
400 |
gtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15534 |
gtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
15435 |
T |
|
| Q |
500 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaatttta |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15434 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagatgaatttta |
15367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 8052 - 7486
Alignment:
| Q |
1 |
atggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||| | |
|
|
| T |
8052 |
atggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgttgggttttcctctttcctgcctcaaactgtaacaaactttggtga |
7953 |
T |
|
| Q |
100 |
acataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacacc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7952 |
acataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaaattaaaaagagtgtagataaaataggctacacc |
7853 |
T |
|
| Q |
200 |
aaaaagagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataa |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7852 |
aaaa-gagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataa |
7754 |
T |
|
| Q |
300 |
aaatggaaggtgtgtaaaaggcaaacctcattgaatgttgataatgatgcaactcgaaccnnnnnnntctggcttcaatcaatcacaaaaacaacttaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7753 |
aaatggaaggtgtgtaaaaggcaaacctcattgaatgttgataatgttgcaactcgaaccaaaaaaatctggcttcaatcaatcacaaaaacaacttaaa |
7654 |
T |
|
| Q |
400 |
gtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7653 |
gtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
7554 |
T |
|
| Q |
500 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaatttta |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7553 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagatgaatttta |
7486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 24071473 - 24070907
Alignment:
| Q |
1 |
atggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||| | |
|
|
| T |
24071473 |
atggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgttgggttttcctctttcctgcctcaaactgtaacaaactttggtga |
24071374 |
T |
|
| Q |
100 |
acataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacacc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24071373 |
acataagaacaaatttgaaaagaaaaactgtaccaattaattattgaacgtgacaaaaatatcaaaaattaaaaagagtgtagataaaataggctacacc |
24071274 |
T |
|
| Q |
200 |
aaaaagagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataa |
299 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24071273 |
taaa-gagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatttcatttataagaagaaataa |
24071175 |
T |
|
| Q |
300 |
aaatggaaggtgtgtaaaaggcaaacctcattgaatgttgataatgatgcaactcgaaccnnnnnnntctggcttcaatcaatcacaaaaacaacttaaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24071174 |
aaatggaaggtgtgtaaaaggcaaacctcattgaatgttcataatgttgcaactcgaaccaaaaaaatctggcttcaatcaatcacaaaaacaacttaaa |
24071075 |
T |
|
| Q |
400 |
gtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
499 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071074 |
gtcaaacttacattaaggaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
24070975 |
T |
|
| Q |
500 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaatttta |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24070974 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaatttta |
24070907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 44484068 - 44484298
Alignment:
| Q |
5 |
cattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaaacat |
103 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
44484068 |
cattgtcatatactcatatacaaataatcacttgcactttgaaaaagatgttgggttttcctctttcctgcctcaaactgtaacaaactttggtgaacat |
44484167 |
T |
|
| Q |
104 |
aagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacaccaaaa |
203 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44484168 |
aagaacaaatttgaaaagaaaaattgcaccaattaattattgaacgtaacaaaaatatcaaaaattaaaaagagtgtagataaaataggctacacc-aaa |
44484266 |
T |
|
| Q |
204 |
agagtgttttacctttattagatgttatagat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44484267 |
agagtgttttacctttattagatgttatagat |
44484298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 2 - 567
Target Start/End: Complemental strand, 19833071 - 19832505
Alignment:
| Q |
2 |
tggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||| || |
|
|
| T |
19833071 |
tggcattgtcataaactcatatataaacagtcacttgcactttgaaaaagatgttgggttttcctctttcctgcctcaaactgtaacaaactttggtgaa |
19832972 |
T |
|
| Q |
101 |
cataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19832971 |
cataagaacaaatttgaaaagaaaaactgtaccaattaattattgaacgtgacaaaaatatcaaaaattaaaaagagtgtagataaaataggctacacct |
19832872 |
T |
|
| Q |
201 |
aaaagagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataaa |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19832871 |
aaa-gagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataaa |
19832773 |
T |
|
| Q |
301 |
aatggaaggtgtgtaaaaggcaaacctcattgaatgttgataatgatgcaactcgaaccnnnnnnntctggcttcaa-tcaatcacaaaaacaacttaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
19832772 |
aatggaaggtgtgtaaaaggcaaacctcattgaatgttcataatgttgcaactcgaaccaaaaaaatctggcttcaaatcaatcacaaaaacaacttaaa |
19832673 |
T |
|
| Q |
400 |
gtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
499 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19832672 |
gtcaaacttacattaaggaagaaaaggtttgaccacaattctatgcctatttgcggtttccttaatttaattctagtagaagtaaagaatctcattgtta |
19832573 |
T |
|
| Q |
500 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaatttta |
567 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19832572 |
gcaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagatgaatttta |
19832505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 2 - 567
Target Start/End: Complemental strand, 18808574 - 18808011
Alignment:
| Q |
2 |
tggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||| || |
|
|
| T |
18808574 |
tggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgttgggttttcctctttcctgcctcaaactgtaacaaactttggtgaa |
18808475 |
T |
|
| Q |
101 |
cataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
18808474 |
cataagaacaaatttgaaaagaaaaactgcaccaattaattattaaacgtgacaaaaatatcaaaaattaacaagagtgtagataaaataggctacacc- |
18808376 |
T |
|
| Q |
201 |
aaaagagtgttttacctttattagatgttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataagaagaaataaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18808375 |
aaaagagtgttttacctttattagatgttatagatattcttgctaaaaaatcaaatagactgaagatataaaatagatgtcatttat---aagaaataaa |
18808279 |
T |
|
| Q |
301 |
aatggaaggtgtgtaaaaggcaaacctcattgaatgttgataatgatgcaactcgaaccnnnnnnntctggcttc-aatcaatcacaaaaacaacttaaa |
399 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| | ||||||| ||||||||||||||| |||||||| |
|
|
| T |
18808278 |
aatggaaggtgtgtaaaagacaaacatcattgaatgttcataatgttgcaactcgaaccaaaaaaatatggcttcaaatcaatcacaaaaataacttaaa |
18808179 |
T |
|
| Q |
400 |
gtcaaacttacattaacgaagaaaaggtttgaccacaattccatgcctatttgcagtttccttaatttaattctagtagaagtaaagaatcccattgtta |
499 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
18808178 |
gtcaaacttacattaaggaagaaaaggtttgaccacaattccatgtctatttgcagtttccttaatttaattctagtagaagtaaagaatctcattgtca |
18808079 |
T |
|
| Q |
500 |
gaaatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaatttta |
567 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
18808078 |
gcaatttaaaggaattgaattaacaaataaaaattggtttgagtctcccttttcttagataaatttta |
18808011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 18565371 - 18565138
Alignment:
| Q |
2 |
tggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||| |||||||||||||||| || |
|
|
| T |
18565371 |
tggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgttgggttttcctcttttctgcctcaaagtgtaacaaactttggtgaa |
18565272 |
T |
|
| Q |
101 |
cataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18565271 |
cataagaacaaatttgaaaagaaaaactgcaccaattaattattgaacgtgacaaaaatattaaaaattaaaaagagtgtagataaaataggctacacc- |
18565173 |
T |
|
| Q |
201 |
aaaagagtgttttacctttattagatgttatagat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18565172 |
aaaagagtgttttacctttattagatgttatagat |
18565138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 12316951 - 12317114
Alignment:
| Q |
127 |
ctgcaccaattaattattgaacgtgacaaaaatatcaaaatttaaaaagagtgtagataaaataggctacaccaaaaagagtgttttacctttattagat |
226 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12316951 |
ctgcaccaattaattattgaacatgataaaaatatcaaaagttaaaaagagtgtagataaaataggctacaccaaaa-gagtgttttacctttattagat |
12317049 |
T |
|
| Q |
227 |
gttatagatattcttgttaaaaaatcaaatagactgaagatataaaatagatgtcatttataaga |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12317050 |
gttatagatattcttgttaaaaaatcaaataaactgaagatataaaatagatgtcatttataaga |
12317114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 12316881 - 12316949
Alignment:
| Q |
2 |
tggcattgtcatatactcatatacaaacagtcacttgcactttgaaaaagatgctgggtttttctcttt |
70 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
12316881 |
tggcattgtcatatactcatatgcaaacagtcacttgcactttgaaaaagatgttgggttttcctcttt |
12316949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 12319604 - 12319669
Alignment:
| Q |
502 |
aatttaaaggaattgaattaacaaataaaaattggtttgagtctctcttttcttagatgaatttta |
567 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
12319604 |
aatttaaaggaattgaattaacgaataaaaattggtttgagtctccctttttttagatgaatttta |
12319669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 19191072 - 19190951
Alignment:
| Q |
36 |
ttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaaacataagaa-caaatttgaaaagaaaaactgcacc |
133 |
Q |
| |
|
||||||||||||||||||| | |||||| || | | ||||| |||| |||||||||||| || |||||||||| |||||||||||||||||| |||||| |
|
|
| T |
19191072 |
ttgcactttgaaaaagatgtttggttttcctatctactgcctcaaacagtaacaaacttttgtgaacataagaaacaaatttgaaaagaaaaaatgcacc |
19190973 |
T |
|
| Q |
134 |
aattaattattgaacgtgacaa |
155 |
Q |
| |
|
||||||||| ||||| |||||| |
|
|
| T |
19190972 |
aattaattagtgaacttgacaa |
19190951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 44197233 - 44197112
Alignment:
| Q |
36 |
ttgcactttgaaaaagatgctgggtttttctctttt-tgccttaaactgtaacaaactttggtaaacataagaa-caaatttgaaaagaaaaactgcacc |
133 |
Q |
| |
|
||||||||| ||||||||| | ||||| |||||| ||||| |||| ||||||||||||||| || ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
44197233 |
ttgcactttaaaaaagatgttttgttttcctctttcatgcctcaaacggtaacaaactttggtgaatataagaaacaaatttgaaaagaaaatctgcacc |
44197134 |
T |
|
| Q |
134 |
aattaattattgaacgtgacaa |
155 |
Q |
| |
|
||||||||| ||||| |||||| |
|
|
| T |
44197133 |
aattaattagtgaacttgacaa |
44197112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 22292066 - 22292019
Alignment:
| Q |
284 |
ttataagaagaaataaaaatggaaggtgtgtaaaaggcaaacctcatt |
331 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
22292066 |
ttataagaagaaataaaaattgaaggtgtgtaataggcaaacctcatt |
22292019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University