View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_11 (Length: 392)
Name: NF17309_low_11
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 39956731 - 39956368
Alignment:
| Q |
19 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
119 |
ccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
39956532 |
T |
|
| Q |
219 |
atgttacgatgaag---atgagtgaagagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
315 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956531 |
atgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
39956432 |
T |
|
| Q |
316 |
acatgctgtgtctatttatagtaaaggggtttggagagtttagagtggtttggtttacggagaa |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39956431 |
acatgctgtgtctatttatagtaaaggggtttcgagagtttagagtggtttggtttacggagaa |
39956368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 39941051 - 39940766
Alignment:
| Q |
18 |
ggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
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| T |
39941051 |
ggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctaacagtaacctgtttct |
39940952 |
T |
|
| Q |
118 |
gccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39940951 |
gccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctggagc |
39940852 |
T |
|
| Q |
218 |
catgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39940851 |
catgttacgatgaagatgagtgaagagtgtggttgtatcagagtgtttggttttgattttgcgattgttaatgaagtcgctttcgt |
39940766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 28750726 - 28750890
Alignment:
| Q |
17 |
aggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttc |
116 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||||| |||| | | |||||||||||| || ||||||||| |
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| T |
28750726 |
aggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagactcgcaaatattgccctaacagtgacctgtttc |
28750825 |
T |
|
| Q |
117 |
tgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatc |
181 |
Q |
| |
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||||||| |||||||||| ||||||||||||| ||||| || |||||||| || ||||||||||| |
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| T |
28750826 |
tgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 28741881 - 28742020
Alignment:
| Q |
17 |
aggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttc |
116 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||| |||||| | || ||||||||| |||||||| ||| |
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| T |
28741881 |
aggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttc |
28741980 |
T |
|
| Q |
117 |
tgccacgaaggaacagattttccttcaaaccccttttcaa |
156 |
Q |
| |
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||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
28741981 |
tgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 7961162 - 7961298
Alignment:
| Q |
17 |
aggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttc |
116 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || | || | || |||||| | ||| ||| ||||||| || | || |
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| T |
7961162 |
aggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagccataaccgtgacattttgg |
7961261 |
T |
|
| Q |
117 |
tgccacgaaggaacagattttccttcaaacccctttt |
153 |
Q |
| |
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|||||| |||||| ||||||||||||||||| |||| |
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|
| T |
7961262 |
tgccacataggaactgattttccttcaaacccttttt |
7961298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 7963687 - 7963852
Alignment:
| Q |
19 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactcactactattgccctaaccgtaacctgtttct |
117 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| ||||| |||||||||| || ||||||| |||||| | ||| | ||||||| |||| | ||||| |
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|
| T |
7963687 |
gaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactcacgaatataggcctaaccataacatttttct |
7963786 |
T |
|
| Q |
118 |
gccacgaaggaacaga-ttttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcg |
182 |
Q |
| |
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|||| ||||| || ||||||||||||| | ||||| || ||||||| || | |||||||||| |
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|
| T |
7963787 |
gccatataggaattgatttttccttcaaacactttttccacataaatctcctctaattgttcatcg |
7963852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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