View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_15 (Length: 380)
Name: NF17309_low_15
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 20841676 - 20842029
Alignment:
| Q |
11 |
cacagacgcaaagttcttcaaagggtcacatttcggcgatggcacacgaatcaacccgccatactccatctcctgcattctataattaacaaaaacattc |
110 |
Q |
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| T |
20841676 |
cacagatgcaaagttcttcaacggatcacatttcggcgaaggcacacgaatcaacccgccatactccatctcctgcattctataattaacaaaaacattc |
20841775 |
T |
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| Q |
111 |
ctcacctgagattcattgtctataaaatttgcaactttaagacaattcttagtaacaataccgaaaagttcgagctcgttgttaaaatccttgattaaac |
210 |
Q |
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| T |
20841776 |
ctcacctgagattcattgtctataaaatttgcaactttaagacaattcttagtaacaataccgaaaagttcgagctcgttgttaaaatccttgattaaac |
20841875 |
T |
|
| Q |
211 |
taacaaacccttgaagctgacaagaagtatttaccatccaatggttttgattctccaaattcctcaatgccttagccttaaacttatcagcaacaattcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20841876 |
taacaaacccttgaagctgacaagaagtatttaccatccaatggttttgattctccaaattcctcaatgccttagccttaaacttatcagcaacaattcc |
20841975 |
T |
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| Q |
311 |
tacacatctttgaacaacactaccactaacaccagtcacagtctcccacaaaac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20841976 |
tacacatctttgaacaacactaccactaacaccagtcacagtctcccacaaaac |
20842029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 304
Target Start/End: Complemental strand, 42254962 - 42254851
Alignment:
| Q |
193 |
taaaatccttgattaaactaacaaacccttgaagctgacaagaagtatttaccatccaatggttttgattctccaaattcctcaatgccttagccttaaa |
292 |
Q |
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||||||| |||||||||||| ||| |||||| ||||||||| ||| ||||||||||| || |||||||||| || ||||||||||||| || || |
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| T |
42254962 |
taaaatctttgattaaactattaaaaccttgatactgacaagagagattcaccatccaatgattccgattctccaagtttctcaatgccttagatttgaa |
42254863 |
T |
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| Q |
293 |
cttatcagcaac |
304 |
Q |
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| T |
42254862 |
cttgtcagcaac |
42254851 |
T |
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