View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_16 (Length: 374)
Name: NF17309_low_16
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 33550244 - 33550454
Alignment:
| Q |
3 |
tccaagaatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgc |
102 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550244 |
tccaacaatatcatcattttccaaacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgc |
33550343 |
T |
|
| Q |
103 |
tactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550344 |
tactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaag |
33550443 |
T |
|
| Q |
203 |
gtacgttatca |
213 |
Q |
| |
|
||||||||||| |
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| T |
33550444 |
gtacgttatca |
33550454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 26230618 - 26230829
Alignment:
| Q |
3 |
tccaagaatatcatcattttccagacaatgttgacattatttttggatactacggaaataat-ctttttaaagttataatgttcagggaagtattttgcg |
101 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26230618 |
tccaacaatatcatcattttccagacaatgttgacattatttttggatactacggaaataattctttttaaagttataatgttcagggaagtattttgcg |
26230717 |
T |
|
| Q |
102 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230718 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
26230817 |
T |
|
| Q |
202 |
ggtacgttatca |
213 |
Q |
| |
|
|||||||||||| |
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| T |
26230818 |
ggtacgttatca |
26230829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 367
Target Start/End: Original strand, 26230909 - 26230983
Alignment:
| Q |
293 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230909 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
26230983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 367
Target Start/End: Original strand, 33550533 - 33550607
Alignment:
| Q |
293 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33550533 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
33550607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 8335588 - 8335378
Alignment:
| Q |
3 |
tccaagaatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgc |
102 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8335588 |
tccaacaatatcatcattttccagacaatgttgacattatttttggatactatggaaataatctttttaaagttataatgttcagggaagttttttgcgc |
8335489 |
T |
|
| Q |
103 |
tactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaag |
202 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8335488 |
tactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaag |
8335389 |
T |
|
| Q |
203 |
gtacgttatca |
213 |
Q |
| |
|
|||| |||||| |
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|
| T |
8335388 |
gtacattatca |
8335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 8335298 - 8335224
Alignment:
| Q |
293 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
367 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8335298 |
agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgctgtgatgatg |
8335224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 4684949 - 4684810
Alignment:
| Q |
74 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684949 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
4684850 |
T |
|
| Q |
174 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4684849 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
4684810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 4684730 - 4684656
Alignment:
| Q |
293 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4684730 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
4684656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 26632561 - 26632645
Alignment:
| Q |
3 |
tccaagaatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcag |
87 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
26632561 |
tccaacaatatcatcatttttccgataatgttgacattctttttggataatataaaaataatctttttaaagttataatgttcag |
26632645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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