View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_17 (Length: 362)
Name: NF17309_low_17
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 5372053 - 5371715
Alignment:
| Q |
15 |
accattggctgagaatgctacactacatgcgttaagaatggcagctaaatttcacttattatgatggttgtagctgccactattaaccaaactggcggtt |
114 |
Q |
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| T |
5372053 |
accattggctgagaatgctacactacatgcgttaagaatggcagctaaatttcacttattatgatggttgtagctgccactattaaccaaactggcggtt |
5371954 |
T |
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| Q |
115 |
ccccaaattgctgcaatttttcagatgaaaacaaccaaaaccacaatagaagaaaagcaaactttctcaaatagttatcaaatatgaaaacaacacaaat |
214 |
Q |
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| T |
5371953 |
ccccaaattgctgcaatttttcagatgaaaacaaccaaaaccacaatagaagaaaagcaaactttctcaaatagttatcaaatatgaaaacaacacaaat |
5371854 |
T |
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| Q |
215 |
gcttttatctcaaaaatggtggctgcatttccttattccatccaaagccatcttttaacaactgattcgtgggtctgttaattttccaataacatttgcc |
314 |
Q |
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| T |
5371853 |
gcttttatctcaaaaatggtggctgcatttccttattccatccaaagccatcttttaacaactgattcgtgggtctgttaattttccaataacatttgcc |
5371754 |
T |
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| Q |
315 |
aaaaccatattcttaattaaatcatctcctcacaggttc |
353 |
Q |
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| T |
5371753 |
aaaaccatattcttaattaaatcatctcctcactggttc |
5371715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 26059057 - 26059013
Alignment:
| Q |
238 |
tgcatttccttattccatccaaagccatcttttaacaactgattc |
282 |
Q |
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| T |
26059057 |
tgcatgtccttattccatacaaagccaccttttaacaactgattc |
26059013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 39132880 - 39132826
Alignment:
| Q |
228 |
aaatggtggctgcatttccttattccatccaaagccatcttttaacaactgattc |
282 |
Q |
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||||| || ||||||||||||||||||| ||| ||||||| ||||||||||||| |
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| T |
39132880 |
aaatgctgcctgcatttccttattccatacaacgccatctcctaacaactgattc |
39132826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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