View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_19 (Length: 349)
Name: NF17309_low_19
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 44848919 - 44848582
Alignment:
| Q |
1 |
ctcccagtggcacatgtttcatacagtgagccttcttcaccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgagga |
100 |
Q |
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| T |
44848919 |
ctcccagtggcacatgtttcatacagtgagccttcttcaccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgagga |
44848820 |
T |
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| Q |
101 |
aaagaaaaagtgacaaggtatgagaattctttgccatctttgtgaatgtctggggttgttgtgacttgtgaatgattactctttgcacttgtgatattta |
200 |
Q |
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| T |
44848819 |
aaagaaaaagtgacaaggtatgagaattctttgccatctttgtgaatgtctggggttgttgtgacttgtgaatgattactctttgcacttgtgatattta |
44848720 |
T |
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| Q |
201 |
tactgtgaatgggttgtattcacaccttgacgtaatctaataatattttacactagcttccaattatatctaaataaaatatacatgtacatatgttttg |
300 |
Q |
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| T |
44848719 |
tactgtgaatgggttgtattcacaccttgacgtaatctaataatattttacactagcttccaattatatctaaat-aaatatacatgttcatatgttttg |
44848621 |
T |
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| Q |
301 |
ccaagtaataatataatagtgatactataatgacctatg |
339 |
Q |
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| T |
44848620 |
ccaagtaataatataatagtgatactataatgacctatg |
44848582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 44837790 - 44837678
Alignment:
| Q |
40 |
ccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaa---aagaaaaagtgac---aaggtatgagaattctttg |
133 |
Q |
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| T |
44837790 |
ccattttggccccaatagattgctatgccaccagcatgggaagttgcaactagagtgaggaatagaagaataagagacaaaaaggtgtgagagttttttg |
44837691 |
T |
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| Q |
134 |
ccatctttgtgaa |
146 |
Q |
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| T |
44837690 |
ccatctttgtgaa |
44837678 |
T |
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