View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17309_low_2 (Length: 496)
Name: NF17309_low_2
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Original strand, 50732556 - 50733026
Alignment:
| Q |
16 |
gcaacaacataaccaacagaagagaaatttcctcaattcaaaccgaatcaattgaaactaaagcaaacttagctagagcataagcaacatcattatcaac |
115 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
50732556 |
gcaacaacataaccaacaaaagaggaatttcctcaatccaaaccgaatcaattgaaactaaagcaaacttagctagagcatgagcaacatcattatcaac |
50732655 |
T |
|
| Q |
116 |
tcttcatacatgaaaaactaaaaatgaagaaagcaaacaactaagactttaatcaccaaaccaaagtaaaaattatgatcggtagacgacttcacagcct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || || |
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|
| T |
50732656 |
tcttcatacatgaaaaactaaaaatgaagaaagcaaacaactaagattttaatcaccaaaccaaagtaaaaattatcatcggtagacgacttcatagtct |
50732755 |
T |
|
| Q |
216 |
tcaccacattaagacttaagagaaacaccttccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50732756 |
tcaccacattaagacttaagagaaacaccttccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaa |
50732855 |
T |
|
| Q |
316 |
caatgttatcatcaagaagtgcctcaaagtttcatatagcatccgctaaaataaaattttatgagtctctaactatagctcctattcagatgcatcaatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50732856 |
caatgttatcatcaagaagtgcctcaaagtttcatacagcatccgctaaaataaaattttatgagtctctaactatagctcctattcagatgcatcaatg |
50732955 |
T |
|
| Q |
416 |
ttcaatttaaaagaagatgtgggagaaggatttcagttagagggagaaaatacggaaatagttgacttcat |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
50732956 |
ttcaatttaaaagaagatgtgggagaaggatttcagttagagggagaaaatacagaaatagttgacttcat |
50733026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 50780299 - 50779829
Alignment:
| Q |
16 |
gcaacaacataaccaacagaagagaaatttcctcaattcaaaccgaatcaattgaaactaaagcaaacttagctagagcataagcaacatcattatcaac |
115 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
50780299 |
gcaacaacataaccaacaaaagaggaatttcctcaatccaaaccgaatcaattgaaactaaagcaaacttagctagagcatgagcaacatcattatcaac |
50780200 |
T |
|
| Q |
116 |
tcttcatacatgaaaaactaaaaatgaagaaagcaaacaactaagactttaatcaccaaaccaaagtaaaaattatgatcggtagacgacttcacagcct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || || |
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|
| T |
50780199 |
tcttcatacatgaaaaactaaaaatgaagaaagcaaacaactaagattttaatcaccaaaccaaagtaaaaattatcatcggtagacgacttcatagtct |
50780100 |
T |
|
| Q |
216 |
tcaccacattaagacttaagagaaacaccttccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50780099 |
tcaccacattaagacttaagagaaacaccttccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaa |
50780000 |
T |
|
| Q |
316 |
caatgttatcatcaagaagtgcctcaaagtttcatatagcatccgctaaaataaaattttatgagtctctaactatagctcctattcagatgcatcaatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50779999 |
caatgttatcatcaagaagtgcctcaaagtttcatacagcatccgctaaaataaaattttatgagtctctaactatagctcctattcagatgcatcaatg |
50779900 |
T |
|
| Q |
416 |
ttcaatttaaaagaagatgtgggagaaggatttcagttagagggagaaaatacggaaatagttgacttcat |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50779899 |
ttcaatttaaaagaagatgtgggagaaggatttcagttagagggagaaaatacagaaatagttgacttcat |
50779829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 37120770 - 37120655
Alignment:
| Q |
231 |
ttaagagaaacaccttccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaacaatgttatcatcaa |
330 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||| || | |||||||||||||| || ||||| |
|
|
| T |
37120770 |
ttaagataatcaccttccacaataatgtttctaaaacccatatcataggcaaattgaattgccaaccaaagtccaagagcttcaacaatggtagcatcag |
37120671 |
T |
|
| Q |
331 |
gaagtgcctcaaagtt |
346 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37120670 |
gaagtgcctcaaagtt |
37120655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 41 - 371
Target Start/End: Original strand, 18927231 - 18927564
Alignment:
| Q |
41 |
aatttcctcaattcaaaccgaatcaattgaaactaaagcaaacttagctagagcataagcaacatcattatcaactcttcatacatgaaaaactaaaaat |
140 |
Q |
| |
|
|||||||| ||| ||||| ||||| | ||| |||| ||||||||||||| ||||| ||||| | ||| || |||||| |||||| |||||||||| |
|
|
| T |
18927231 |
aatttccttaatccaaacaaaatcagtcgaatctaaggcaaacttagctaaagcatgagcaatagagttaccacctcttcgcacatgagaaactaaaaaa |
18927330 |
T |
|
| Q |
141 |
gaagaaagcaaacaactaagact----------ttaatcaccaaaccaaagtaaaaattatgatcggtagacgacttcacagccttcaccacattaagac |
230 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||| ||| |||| | || | || | ||||| |||||| |||||| ||||| |
|
|
| T |
18927331 |
gaagaaaacaaacaactaagactcttacaatcattaatcaccaaaccaaaataagaattgtcattgctatgtgccttcaaagccttgaccacaataaga- |
18927429 |
T |
|
| Q |
231 |
ttaagagaaacaccttccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaacaatgttatcatcaa |
330 |
Q |
| |
|
||| |||||||||| ||||||||| |||| ||||||||||| |||||||||||| ||| ||||||| |||||||||||||| || ||||| |
|
|
| T |
18927430 |
------gaatcaccttccacgataatgtttctaaaacccatatcataggaaaattgaattgccaacctaaatctaagagcttcaacaatggtagcatcag |
18927523 |
T |
|
| Q |
331 |
gaagtgcctcaaagtttcatatagcatccgctaaaataaaa |
371 |
Q |
| |
|
|||||||||||||||| ||| |||| || ||||| ||||| |
|
|
| T |
18927524 |
gaagtgcctcaaagttccatgaagcagccactaaactaaaa |
18927564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 5538352 - 5538477
Alignment:
| Q |
37 |
gagaaatttcctcaattcaaaccgaatcaattgaaactaaagcaaacttagctagagcataagcaacatcattatcaactcttcatacatgaaaaactaa |
136 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||| | | ||| ||||||||| |||||| ||||||| |
|
|
| T |
5538352 |
gagaattttcctcaatccaaacaaaatcaattgaaactaaagcaaacttagctagataatgagcaataacgtta-caactcttcgcacatgagaaactaa |
5538450 |
T |
|
| Q |
137 |
aaatgaagaaagcaaacaactaagact |
163 |
Q |
| |
|
||| ||||||| |||||| |||||||| |
|
|
| T |
5538451 |
aaacgaagaaaacaaacatctaagact |
5538477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 5040115 - 5040166
Alignment:
| Q |
35 |
aagagaaatttcctcaattcaaaccgaatcaattgaaactaaagcaaacttag |
87 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
5040115 |
aagagaaatttcctcgattcaaacaaaatcaattg-aacgaaagcaaacttag |
5040166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 344
Target Start/End: Complemental strand, 45338897 - 45338784
Alignment:
| Q |
231 |
ttaagagaaacaccttccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaacaatgttatcatcaa |
330 |
Q |
| |
|
|||||||||| || |||||| | ||||||| |||| ||||||||||||||||||||||||| |||| ||||| | |||||||| |||||||| | ||| |
|
|
| T |
45338897 |
ttaagagaaatacattccacgacaatgtttcaaaaactcatatcataggcaaattgaattgccaactgaaatccaagagcttcagcaatgttagcttcag |
45338798 |
T |
|
| Q |
331 |
gaagtgcctcaaag |
344 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
45338797 |
gaagcgcctcaaag |
45338784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 26194807 - 26194928
Alignment:
| Q |
41 |
aatttcctcaattcaaaccgaatcaattgaaactaaagcaaacttagctagagcataagcaacatcattatcaactcttcatacatgaaaaactaaaaat |
140 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||||||||||||| ||| ||||||| | ||| ||||||||| ||||| ||||||||||| |
|
|
| T |
26194807 |
aatttcctcaatccaaatagaatcaatcagaactaaagcaaacttagctagatcatgagcaacaac-ttaccaactcttcgcgcatgagaaactaaaaat |
26194905 |
T |
|
| Q |
141 |
gaagaaagcaaacaactaagact |
163 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
26194906 |
gaagaaaattaacaactaagact |
26194928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 2053371 - 2053493
Alignment:
| Q |
41 |
aatttcctcaattcaaaccgaatcaattgaaactaaagcaaacttagctagagcataagcaacatcattatcaactcttcatacatgaaaaactaaaaat |
140 |
Q |
| |
|
|||||||||||| ||||| |||||| | ||| |||| |||||||||| |||||||| ||| | | ||| ||||||||| |||||| |||||||||| |
|
|
| T |
2053371 |
aatttcctcaatccaaacagaatcactcgaatctaaggcaaacttagttagagcatgagcgatagagttaccaactcttcgcacatgagaaactaaaaaa |
2053470 |
T |
|
| Q |
141 |
gaagaaagcaaacaactaagact |
163 |
Q |
| |
|
||||||| |||||| ||||||| |
|
|
| T |
2053471 |
gaagaaaataaacaaataagact |
2053493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 389
Target Start/End: Original strand, 10349689 - 10349831
Alignment:
| Q |
247 |
ccacaataatgttttgaaaattcatatcataggcaaattgaattgcaaactaaaatctatgagcttcaacaatgttatcatcaagaagtgcctcaaagtt |
346 |
Q |
| |
|
|||||| ||||||| ||||| |||| |||| |||||||||||| ||| |||||| | || ||| | |||| ||| |||||||||| ||||||||||| |
|
|
| T |
10349689 |
ccacaacaatgtttcgaaaacctatattatagacaaattgaattggcaaccaaaatccaagaactttagcaatattagcatcaagaagcgcctcaaagtt |
10349788 |
T |
|
| Q |
347 |
tcatatagcatccgctaaaataaaattttatgagtctctaact |
389 |
Q |
| |
|
||| | ||| ||||||| |||| | |||||||||||||| |
|
|
| T |
10349789 |
ccatgtggcagttgctaaaacaaaacataatgagtctctaact |
10349831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 44120543 - 44120507
Alignment:
| Q |
51 |
attcaaaccgaatcaattgaaactaaagcaaacttag |
87 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44120543 |
attcaaacataatcaattgaaactaaagcaaacttag |
44120507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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