View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_low_22 (Length: 318)

Name: NF17309_low_22
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_low_22
NF17309_low_22
[»] chr5 (1 HSPs)
chr5 (17-311)||(9463090-9463383)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 9463383 - 9463090
Alignment:
Q  17 tataggacccttaatcaacttctaactgaaaaaaggaacattcagttttagtgtgtatatccgtgcacataatgggagagaatttttcccttaattaaat 116  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||    
T  9463383 tataggacccttaatcaagttataactaaaaaaaggaacattcagttttagtgtgtatatccgtgcaccgaatgagagagaatttttctcttaattaaat 9463284  T
Q  117 ttaaattaaaataccttacactttataatatgaataatataggatatacatacggttctcaaggagaaaatattatgtcaattaaaattttcagaaacaa 216  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||    
T  9463283 ttaaattaaaataccttacactttataatatgaatattataggatatacatatggttctcaaggagaaaatattttgtctattaaatttttcagaaacaa 9463184  T
Q  217 tctcaaatatcaaaagcattatataagggaaagtgactgctattaggatagtgacaaaaagaaatccaacaaattgagtccaacttgagataata 311  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||    
T  9463183 tctc-aatatcaaaagcattatataagggaaagtgactactattaggatattcacaaaaagaaatccaacaaattgagtccaacttgagagaata 9463090  T

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