View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_low_23 (Length: 309)

Name: NF17309_low_23
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_low_23
NF17309_low_23
[»] chr3 (7 HSPs)
chr3 (1-295)||(2441750-2442044)
chr3 (70-190)||(12132889-12133009)
chr3 (6-190)||(13479324-13479508)
chr3 (71-191)||(7432177-7432297)
chr3 (134-175)||(2678541-2678582)
chr3 (126-175)||(3754460-3754509)
chr3 (126-175)||(4142279-4142328)
[»] chr7 (2 HSPs)
chr7 (6-250)||(1078245-1078489)
chr7 (136-191)||(24723212-24723267)
[»] chr5 (2 HSPs)
chr5 (132-186)||(1427824-1427878)
chr5 (122-175)||(2067212-2067265)
[»] chr4 (1 HSPs)
chr4 (124-190)||(20019896-20019962)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 2441750 - 2442044
Alignment:
Q  1 atctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaattaattggttg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441750 atctattaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaattaattggttg 2441849  T
Q  101 gccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnn 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  2441850 gccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctggggggg 2441949  T
Q  201 taaatgtgtgtaacttcttggccttgtttgtgttgagagattgtttgtgcgtgacttatggtgatagtgattttgattcggttatgaaggatgtt 295  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2441950 taaatgtgtgtaacttcttggccttgtttgtgttgagggattgtttgtgcgtgacttatggtgatagtgattttgattcggttctgaaggatgtt 2442044  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 12132889 - 12133009
Alignment:
Q  70 taaatttgtgagtgacacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttat 169  Q
    |||||||||||||| ||| |||||||||||  ||  ||||||| |||||   | |||||| || |||||| |||||||||||||||  |||||||||| |    
T  12132889 taaatttgtgagtggcacgattaattggttaacctctattgatcttgatccaaaaagtcctcgttttattgtttcttttgatttgggaaaagagtctttt 12132988  T
Q  170 caaaaggtattgcttcctgat 190  Q
    | |||||| |||| |||||||    
T  12132989 cgaaaggttttgcctcctgat 12133009  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 13479324 - 13479508
Alignment:
Q  6 gtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaattaattggttggccgt 105  Q
    ||||| ||| |||||||| ||||||||||||| | ||||||  ||| | |  |||| |||| || ||||||||||||| ||  |||||||||||||||      
T  13479324 gtacccatttttggaaaaccattcaggagtttccctttggtgttatgcctgttgagaaatctggaaaatttgtgagtggcaggattaattggttggcctc 13479423  T
Q  106 tattgatttt-gatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 190  Q
    || ||||||  ||  | | |||||||||||| ||| ||||||||||||||  |||||| |||||| |||| || |||| |||||||    
T  13479424 tactgatttaagactgca-aagtccacgcttcattgtttcttttgatttgcggaaagaatcttatgaaaaagttttgcctcctgat 13479508  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 7432297 - 7432177
Alignment:
Q  71 aaatttgtgagtgacacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatc 170  Q
    |||||||| |||| |||||||||||||||| ||  |||||| ||| || ||  |||||||  ||||||| |||||| |||||||| ||| || || ||||    
T  7432297 aaatttgtaagtggcacaattaattggttgacctctattgaattttatagggaaagtccatactttattgtttcttatgatttggggaaggaatcatatc 7432198  T
Q  171 aaaaggtattgcttcctgatt 191  Q
    || |||| ||||| |||||||    
T  7432197 aagaggttttgctacctgatt 7432177  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 2678582 - 2678541
Alignment:
Q  134 tttattatttcttttgatttggagaaagagtcttatcaaaag 175  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaag 2678541  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 3754460 - 3754509
Alignment:
Q  126 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 175  Q
    |||||||||||||| |||||||||||||||  || ||||| |||||||||    
T  3754460 gtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaag 3754509  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 4142328 - 4142279
Alignment:
Q  126 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 175  Q
    ||||| |||||||| |||||||||||||||  || |||||||||||||||    
T  4142328 gtccatgctttattgtttcttttgatttggcaaaggagtcttatcaaaag 4142279  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 1078489 - 1078245
Alignment:
Q  6 gtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaattaattggttggccgt 105  Q
    ||||||||| |||||||| |||||| |||||| ||||||||  | |||    ||  ||||| || |||||| |||||| ||| |||||||||||| ||      
T  1078489 gtaccaattcttggaaaagcattcaagagtttccttttggtgttgtcccaattggacaatctggaaaatttctgagtggcacgattaattggttgacctc 1078390  T
Q  106 tattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnntaaat 205  Q
    ||||||| |  |  |   |||||| ||||||||| |||||||||||||||  ||||| |||||||||||||| |||| |||||||| |       || ||    
T  1078389 tattgatctccaacgagaaagtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagat 1078290  T
Q  206 gtgtgtaacttcttggccttgtttgtgttgagagattgtttgtgc 250  Q
    |||||| ||||||| ||||||  ||||||||| ||||| ||||||    
T  1078289 gtgtgtcacttcttagccttgggtgtgttgagggattgcttgtgc 1078245  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 24723212 - 24723267
Alignment:
Q  136 tattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgatt 191  Q
    |||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgatt 24723267  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 1427878 - 1427824
Alignment:
Q  132 gctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcc 186  Q
    |||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||    
T  1427878 gctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttcc 1427824  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 2067265 - 2067212
Alignment:
Q  122 agaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 175  Q
    |||| |||| |||||||| |||| | |||||||| |||||||||||||||||||    
T  2067265 agaaatccaagctttattgtttcatatgatttggggaaagagtcttatcaaaag 2067212  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 20019962 - 20019896
Alignment:
Q  124 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 190  Q
    |||| ||| ||||||| |||||||||||||||||||||| | || || |||||| |||| |||||||    
T  20019962 aagtgcactctttattgtttcttttgatttggagaaagaattttgtcgaaaggttttgcctcctgat 20019896  T

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