View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_24 (Length: 298)
Name: NF17309_low_24
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 40215379 - 40215107
Alignment:
| Q |
18 |
tttcatatatgagtgcctaacacaatctcaaatgtgaacgatgtgcacagaaaaatgctcaaagctgaaattattaataatgtgaaaggttggttcgaca |
117 |
Q |
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| T |
40215379 |
tttcatatatgaatgcctaacacaatctcaaatgtgaacgatgtgcatagaaaaatgctcaaaactgaaattattaataatgtaaaaggttggttcgaca |
40215280 |
T |
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| Q |
118 |
aaatacctccaaaactggaacagttcccttgaaacagtgttgttcatgcttccctacctcccctttaagatcattgagaaatttataaatgtgatcaaac |
217 |
Q |
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| T |
40215279 |
aaatacctccaaaactggagcagttccatagaaacagtgttgttcatgcttccctacctcccctttaagatcattgagaaattcacaaatgtgatcaaac |
40215180 |
T |
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| Q |
218 |
acagcttttgccgagttgattttaccaaaagccttcatacctttgacttacccccgaaaataactagaataat |
290 |
Q |
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| T |
40215179 |
acagcttttgcggaattgattttaccaaaagccttcatatctttgacttacccccgaaaagaactagaataat |
40215107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 40215536 - 40215613
Alignment:
| Q |
32 |
gcctaacacaatctcaaatgtgaacgatgtgcacagaaaaatgctcaaagctgaaattattaataatgtgaaaggttg |
109 |
Q |
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| T |
40215536 |
gcctaacacagtcttagatgtgaacgatgtgtataggaaaatgttcaaaattaaaattattaatattgtgaaaagttg |
40215613 |
T |
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