View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_low_25 (Length: 286)

Name: NF17309_low_25
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_low_25
NF17309_low_25
[»] chr6 (6 HSPs)
chr6 (1-272)||(186613-186884)
chr6 (65-238)||(25073501-25073674)
chr6 (65-130)||(2908499-2908564)
chr6 (65-150)||(5043648-5043732)
chr6 (83-159)||(33211265-33211341)
chr6 (65-151)||(2973002-2973087)
[»] chr4 (19 HSPs)
chr4 (75-180)||(34788847-34788952)
chr4 (66-156)||(32091493-32091583)
chr4 (133-246)||(6766206-6766319)
chr4 (65-158)||(44570428-44570521)
chr4 (65-149)||(33089900-33089984)
chr4 (44-151)||(5349930-5350037)
chr4 (64-234)||(6677406-6677576)
chr4 (65-150)||(22628955-22629042)
chr4 (68-194)||(22882816-22882941)
chr4 (68-194)||(22934480-22934605)
chr4 (64-140)||(26699504-26699580)
chr4 (104-219)||(43272405-43272519)
chr4 (65-151)||(12073412-12073497)
chr4 (44-150)||(34112838-34112944)
chr4 (65-166)||(8665413-8665513)
chr4 (114-240)||(52065528-52065653)
chr4 (87-193)||(6199959-6200065)
chr4 (65-159)||(56178700-56178793)
chr4 (83-159)||(24969123-24969200)
[»] scaffold0053 (1 HSPs)
scaffold0053 (65-241)||(24983-25159)
[»] chr3 (13 HSPs)
chr3 (65-193)||(20937635-20937762)
chr3 (128-246)||(25173618-25173735)
chr3 (83-195)||(50432734-50432846)
chr3 (65-194)||(35138768-35138896)
chr3 (65-151)||(24635277-24635363)
chr3 (44-149)||(25491009-25491114)
chr3 (75-150)||(8166529-8166604)
chr3 (65-158)||(7762278-7762370)
chr3 (65-157)||(46173371-46173462)
chr3 (64-139)||(39127579-39127654)
chr3 (65-151)||(34491232-34491317)
chr3 (65-157)||(54739016-54739108)
chr3 (83-151)||(46860494-46860562)
[»] chr2 (13 HSPs)
chr2 (75-246)||(41446065-41446235)
chr2 (65-252)||(41454155-41454340)
chr2 (65-156)||(42261548-42261639)
chr2 (64-143)||(24398085-24398164)
chr2 (65-151)||(30218107-30218193)
chr2 (65-181)||(34811284-34811400)
chr2 (114-194)||(24197873-24197954)
chr2 (131-241)||(43405895-43406007)
chr2 (65-159)||(17057432-17057526)
chr2 (65-159)||(17085415-17085509)
chr2 (65-151)||(2334481-2334566)
chr2 (65-156)||(33648185-33648277)
chr2 (83-159)||(36205744-36205820)
[»] chr5 (18 HSPs)
chr5 (65-212)||(35616129-35616275)
chr5 (64-156)||(316777-316869)
chr5 (75-195)||(8038172-8038292)
chr5 (65-246)||(32609456-32609641)
chr5 (44-159)||(10700690-10700804)
chr5 (67-238)||(32579157-32579328)
chr5 (114-156)||(4160646-4160688)
chr5 (65-151)||(10054879-10054964)
chr5 (65-196)||(22097846-22097968)
chr5 (82-241)||(32576376-32576536)
chr5 (65-236)||(32583345-32583517)
chr5 (65-157)||(13239765-13239856)
chr5 (66-157)||(3325927-3326018)
chr5 (83-157)||(16641017-16641092)
chr5 (65-151)||(33906093-33906179)
chr5 (65-151)||(40147281-40147366)
chr5 (68-157)||(14689492-14689581)
chr5 (83-151)||(42310015-42310083)
[»] chr1 (15 HSPs)
chr1 (41-152)||(4535519-4535630)
chr1 (69-141)||(6808482-6808554)
chr1 (75-197)||(33775884-33776005)
chr1 (65-159)||(22079328-22079422)
chr1 (44-151)||(12318564-12318671)
chr1 (65-139)||(16914237-16914312)
chr1 (75-156)||(9109492-9109573)
chr1 (68-159)||(2926520-2926611)
chr1 (65-159)||(11348710-11348803)
chr1 (65-151)||(15820327-15820412)
chr1 (44-158)||(41135833-41135947)
chr1 (65-159)||(42298038-42298131)
chr1 (75-159)||(3460707-3460792)
chr1 (143-212)||(31649611-31649680)
chr1 (65-157)||(10925236-10925331)
[»] scaffold0002 (1 HSPs)
scaffold0002 (65-156)||(490383-490474)
[»] chr7 (13 HSPs)
chr7 (85-156)||(43363556-43363627)
chr7 (65-150)||(5116625-5116710)
chr7 (89-156)||(26639335-26639402)
chr7 (65-151)||(2361035-2361120)
chr7 (65-151)||(29608757-29608842)
chr7 (64-156)||(4253590-4253683)
chr7 (65-149)||(1113679-1113762)
chr7 (65-156)||(3904679-3904771)
chr7 (83-139)||(22328471-22328527)
chr7 (65-157)||(23555054-23555145)
chr7 (75-159)||(27073828-27073912)
chr7 (75-159)||(27204401-27204485)
chr7 (83-151)||(48599414-48599482)
[»] chr8 (6 HSPs)
chr8 (65-138)||(7597647-7597720)
chr8 (65-151)||(32902236-32902322)
chr8 (66-234)||(3231859-3232027)
chr8 (65-151)||(1292526-1292611)
chr8 (65-151)||(4162517-4162602)
chr8 (65-159)||(34256570-34256663)
[»] scaffold0176 (1 HSPs)
scaffold0176 (78-159)||(18078-18159)
[»] scaffold0219 (1 HSPs)
scaffold0219 (65-137)||(27505-27577)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-150; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 186884 - 186613
Alignment:
Q  1 aatatgttcacccagttcagcccgacaatgaccttcgtatggaagagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  186884 aatatgttcacccagttcagcccgacaatgaccttcgtatggaagagagatctcttcgcttacttatcaatgaattctttacaaagagatacaaaagagc 186785  T
Q  101 tataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactcgatgatttctcaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  186784 tataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactcgatgatttctcaca 186685  T
Q  201 cacaagatgtttacaattgcttcccaacccaagaatctcactcaaaaaactcttagcctcttaagttcctta 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  186684 cacaagatgtttacaattgcttcccaacccaagaatctcactcaaaaaactcttagcctcttaagttcctta 186613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 25073674 - 25073501
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| ||||||| | ||||||||||||| | || || ||  || ||| ||||||||| | ||||| ||| || ||||||||||||||| | | ||    
T  25073674 tatcaatgagttctttacatagagatacaaaagggttacaataaaatagctttaacaagctcacgaagaataaatctaatttctaccattttttc-aatc 25073576  T
Q  165 tctttccgtgaccaagagactcgatgatttctcacacacaagatgttt-acaattgcttcccaacccaagaatct 238  Q
    || | || ||| ||||| |||| |||||||| | ||| ||||||||||  |||||| |||||||| | |||||||    
T  25073575 tcctcccatgaacaagatactcaatgatttcactcacccaagatgtttcccaattgtttcccaactctagaatct 25073501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 2908564 - 2908499
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctcca 130  Q
    ||||||||| ||||||| ||  ||||||||||||| | |||||| ||| |||||||||||||||||    
T  2908564 tatcaatgagttctttacaataagatacaaaagagttgtaaaaaattatcttcaacaagctctcca 2908499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 5043732 - 5043648
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctac 150  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||||||| ||||||||    
T  5043732 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaacctaatttctac 5043648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 33211265 - 33211341
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||||||||| |||||| || || ||||||||| ||||||| | |||||||| | | |||||||||| ||||||    
T  33211265 aaagagatacaaatgagctacaagaaattaacttcatcaagctcacaaagaacaaccataatttctaccaattttcc 33211341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 2973002 - 2973087
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| | | || || || ||| ||||||||||||| | |||||||||||| |||||||||    
T  2973002 tatcaatgagttctt-acaaagagatacaaatgggttacaagaaattagcttcaacaagctcacaaagaacaaacctaatttctacc 2973087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 34788847 - 34788952
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtg 174  Q
    ||||||| ||||||||||||||||| || || || |||||||||||||||||||||||| ||| ||| |||||||||||||| | || | |||| |||||    
T  34788847 ttctttacaaagagatacaaaagagttacaagaaattaacttcaacaagctctccaagagcaatcctaatttctaccattttcctgaatttcttcccgtg 34788946  T
Q  175 accaag 180  Q
    ||||||    
T  34788947 accaag 34788952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 32091583 - 32091493
Alignment:
Q  66 atcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    |||||||  ||||||| ||||||||||||||||| || || || |||  |||||||| |||||||||||||||||| ||||||| ||||||    
T  32091583 atcaatgtgttctttacaaagagatacaaaagagttacaagaaattagtttcaacaaactctccaagaacaaacctaatttctagcatttt 32091493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 6766206 - 6766319
Alignment:
Q  133 aacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaa 232  Q
    ||||||||| ||||||| | |||| |||| |||||  ||||||||||||||||| |||||||| | ||| |||  |||||| ||||| ||| ||||||||    
T  6766206 aacaaacctaatttctatctttttcccgaatctctacccgtgaccaagagactcaatgatttcactcacccaaagtgtttagaattgtttcacaacccaa 6766305  T
Q  233 gaatctcactcaaa 246  Q
     |||||||| ||||    
T  6766306 taatctcacccaaa 6766319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 44570428 - 44570521
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttc 158  Q
    ||||||||| ||||||| ||||||||||||||  | || || || |||  ||||||||||||||||| ||||||| | ||||||||||||||||    
T  44570428 tatcaatgagttctttacaaagagatacaaaaatgttacaagaaattagtttcaacaagctctccaacaacaaacataatttctaccatttttc 44570521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 33089984 - 33089900
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta 149  Q
    ||||||||| ||||||| | ||||||||||||  | ||||| || ||| |||||||||||||||||||||||||| | |||||||    
T  33089984 tatcaatgagttctttacagagagatacaaaatggttataataaattagcttcaacaagctctccaagaacaaacataatttcta 33089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 5350037 - 5349930
Alignment:
Q  44 agagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacctta 143  Q
    |||||||||||| |||||  ||||||| || ||||||| ||||||||||||| |||||| ||  | ||| |||| ||||| || | |||||||||||| |    
T  5350037 agagagatctctccgcttcattatcaacgagttctttacaaagagatacaaacgagctacaaggaattagcttcgacaagttcacaaagaacaaacctaa 5349938  T
Q  144 tttctacc 151  Q
    ||||||||    
T  5349937 tttctacc 5349930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 6677576 - 6677406
Alignment:
Q  64 ttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaa--ccttatttctaccatttttccga 161  Q
    ||||||| || ||||||| ||||| ||||||||| | || || || ||| ||||||||||||||||||||| |||  ||| |||||||||||||| || |    
T  6677576 ttatcaaagacttctttacaaagatatacaaaagggttacaagaaattagcttcaacaagctctccaagaaaaaaaacctaatttctaccatttt-ccaa 6677478  T
Q  162 ttctctttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaaga 234  Q
    || |||| ||  || |||||||||| || ||||| | ||  |||  ||||||||| || ||||||||||||||    
T  6677477 tt-tcttcccaagaacaagagactcaattatttcactcatccaatgtgtttacaaatgtttcccaacccaaga 6677406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 22628955 - 22629042
Alignment:
Q  65 tatcaatgaattcttta--aaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctac 150  Q
    ||||||||| |||||||  || |||||| |||||||| ||||| || |||||||||| ||||||||||||| ||| ||| ||||||||    
T  22628955 tatcaatgagttctttactaagagagatgcaaaagagttataagaaattaacttcaataagctctccaagagcaatcctaatttctac 22629042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 22882816 - 22882941
Alignment:
Q  68 caatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta-ccatttttccgattctc 166  Q
    |||||| |||||||  |||||||||||||| | || || || ||| ||||||||| |||||||||||||||||| |||| || |||||||||  | ||||    
T  22882816 caatgagttctttacgaagagatacaaaagggttacaagaaattagcttcaacaaactctccaagaacaaacctaatttttatccatttttc--aatctc 22882913  T
Q  167 tttccgtgaccaagagactcgatgattt 194  Q
    ||||| ||| ||||  |||| |||||||    
T  22882914 tttccatgaacaaggcactcaatgattt 22882941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 22934480 - 22934605
Alignment:
Q  68 caatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta-ccatttttccgattctc 166  Q
    |||||| |||||||  |||||||||||||| | || || || ||| ||||||||| |||||||||||||||||| |||| || |||||||||  | ||||    
T  22934480 caatgagttctttacgaagagatacaaaagggttacaagaaattagcttcaacaaactctccaagaacaaacctaatttttatccatttttc--aatctc 22934577  T
Q  167 tttccgtgaccaagagactcgatgattt 194  Q
    ||||| ||| ||||  |||| |||||||    
T  22934578 tttccatgaacaaggcactcaatgattt 22934605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 26699504 - 26699580
Alignment:
Q  64 ttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacc 140  Q
    |||| ||||| ||||||| ||||||||||||||||| || || || ||| ||||||||||||| | |||||||||||    
T  26699504 ttataaatgagttctttacaaagagatacaaaagagttacaagaaattagcttcaacaagctcacaaagaacaaacc 26699580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 43272405 - 43272519
Alignment:
Q  104 aaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactcgatgatttctcacacac 203  Q
    ||||| ||| |||||| |||||||||||||  || ||| ||||||||||||||  | | | |||| | ||||||||||||||| |||||||| |  || |    
T  43272405 aaaaaattagcttcaaaaagctctccaagagtaatcctaatttctaccattttctcaaatatcttcctgtgaccaagagactcaatgatttcactaac-c 43272503  T
Q  204 aagatgtttacaattg 219  Q
    ||||||||||||||||    
T  43272504 aagatgtttacaattg 43272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 12073497 - 12073412
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||||||| |||||||||    
T  12073497 tatcaatgagttctt-acaaagagatacaaatgagttacaataaattagcttcaacaagctcacaaagaacaaacctaatttctacc 12073412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 34112944 - 34112838
Alignment:
Q  44 agagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacctta 143  Q
    |||||||||||| | |||   ||||||||| ||||||| |||||||| |||||| | || |  || ||| |||||||||||||||| ||||||||| | |    
T  34112944 agagagatctctccacttcactatcaatgagttctttacaaagagatgcaaaagggttacatgaaattagcttcaacaagctctcctagaacaaacataa 34112845  T
Q  144 tttctac 150  Q
    |||||||    
T  34112844 tttctac 34112838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 8665513 - 8665413
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| ||||| | ||||||||||||| | | || || || ||| ||||||||||||||| |||||||| ||| |||||||||  |||||| ||||    
T  8665513 tatcaatgagttctt-acaaagagatacaaatgggttacaagaaattagcttcaacaagctctcaaagaacaaccctaatttctacccattttcccattc 8665415  T
Q  165 tc 166  Q
    ||    
T  8665414 tc 8665413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 52065653 - 52065528
Alignment:
Q  114 cttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactcgatgattt-ctcacacacaagatgttt 212  Q
    |||||| |||||||| |||||||| ||| ||||||||| | ||||| | | |||| |  ||| |||||||||||||||||| | | ||| ||||  |||     
T  52065653 cttcaataagctctctaagaacaa-cctaatttctacc-tgtttcccaatatcttccgttgatcaagagactcgatgattttcactcacccaaggggttc 52065556  T
Q  213 acaattgcttcccaacccaagaatctca 240  Q
    ||||||| ||||||||||||||||||||    
T  52065555 acaattgtttcccaacccaagaatctca 52065528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 6199959 - 6200065
Alignment:
Q  87 agatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactc 186  Q
    ||||||||||||| || || || |||  ||||||||  | || |||||||||||| |||||| ||||||| | || ||||||   |||||||||||||||    
T  6199959 agatacaaaagagttacaataaattagtttcaacaaagtgtctaagaacaaacctaatttctgccattttcctgaatctcttcaagtgaccaagagactc 6200058  T
Q  187 gatgatt 193  Q
     ||||||    
T  6200059 aatgatt 6200065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 56178700 - 56178793
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||||| ||||| | ||||||||||||||| | || || || ||| |||||||||| || | |||||||| ||| ||||||||| |||||||    
T  56178700 tatcaatgagttctt-acaaagagatacaaaagggttacaagaaattagcttcaacaagttcacaaagaacaaccctaatttctaccctttttcc 56178793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 24969200 - 24969123
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta-ccatttttcc 159  Q
    ||||||||||||| ||| || || || ||| ||||||||||||| | ||||||||| || ||||||| ||||||||||    
T  24969200 aaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaatctaatttctacccatttttcc 24969123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 241
Target Start/End: Complemental strand, 25159 - 24983
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| ||||||| ||||||||||||||  | || || || ||| ||||||||| ||||| ||||||||| ||  ||||||||||||| |||| ||    
T  25159 tatcaatgagttctttacaaagagatacaaaaaggttacaagaaattaccttcaacaaactctcaaagaacaaaactagtttctaccattttcccgaatc 25060  T
Q  165 tctttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaagaatctcac 241  Q
    |  |   |||| ||| |||||| |||||||| | | | |||| |||||||||||| |||| ||||||||||||||||    
T  25059 ttgtcatgtgatcaacagactcaatgatttcactctcccaaggtgtttacaattgtttccaaacccaagaatctcac 24983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 20937762 - 20937635
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| ||||||  ||||||||||||||| | || || || |||||||||||||||||||||| ||||||| | |||||||||  |||||||| ||    
T  20937762 tatcaatgagttcttttcaaagagatacaaaagggttacaagaaattaacttcaacaagctctccaaaaacaaacataatttctacctattttccga-tc 20937664  T
Q  165 tctttccgtgaccaagagactcgatgatt 193  Q
    ||||||  ||| |||||||||| ||||||    
T  20937663 tctttctatgaacaagagactcaatgatt 20937635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 25173618 - 25173735
Alignment:
Q  128 ccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaa 227  Q
    |||||||||||||| ||||||||| |||| | || |||||  ||||||||||||||||| |||||||| |  || |||| |||||||||||| ||| |||    
T  25173618 ccaagaacaaacctaatttctacccttttccagaatctctagccgtgaccaagagactcaatgatttcacttac-caaggtgtttacaattgtttctcaa 25173716  T
Q  228 cccaagaatctcactcaaa 246  Q
    |  ||||||||||||||||    
T  25173717 cttaagaatctcactcaaa 25173735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 50432734 - 50432846
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagag 182  Q
    ||||||||||||||||  |  || || |||||||||||| ||||||||||| || |||| ||||||||| |||| |||| |||| | | |||||||||||    
T  50432734 aaagagatacaaaagatttgcaagaaattaacttcaacacgctctccaagagcagacctaatttctacccttttcccgaatctcatcctgtgaccaagag 50432833  T
Q  183 actcgatgatttc 195  Q
    |||| ||||||||    
T  50432834 actcaatgatttc 50432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 35138768 - 35138896
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta-ccatttttccgatt 163  Q
    ||||||||| ||||||| ||||||||||||||||| |  || || ||||||||||||| ||| |||||||||||| | ||||||| |||||| ||  | |    
T  35138768 tatcaatgagttctttacaaagagatacaaaagagttgcaagaaattaacttcaacaaactcaccaagaacaaacataatttctacccatttctc--aat 35138865  T
Q  164 ctctttccgtgaccaagagactcgatgattt 194  Q
    |||||||| ||| ||||| |||| |||||||    
T  35138866 ctctttccatgaacaagacactcaatgattt 35138896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 24635363 - 24635277
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||||||  ||| |||||||||||||| || || ||||| ||| ||||||||| |||||||||||||||| | |||||||||    
T  24635363 tatcaatgaattgattataaagagatacaaaatagttacaaaaaattagcttcaacaaactctccaagaacaaacttaatttctacc 24635277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 25491009 - 25491114
Alignment:
Q  44 agagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacctta 143  Q
    |||||||||||| | |||   ||||||||| ||||||| |||||||||||||||   ||||| || | | ||||||||||||||| |||||||||||| |    
T  25491009 agagagatctctccacttcactatcaatgatttctttacaaagagatacaaaaggagtataagaaatcagcttcaacaagctctcaaagaacaaacctaa 25491108  T
Q  144 tttcta 149  Q
    ||||||    
T  25491109 tttcta 25491114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 8166529 - 8166604
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctac 150  Q
    ||||||| ||||||||||||||  | ||||| |  ||||||||||||| |||||||||||||||||| ||||||||    
T  8166529 ttctttacaaagagatacaaaaaggttataagatattaacttcaacaaactctccaagaacaaacctaatttctac 8166604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 7762370 - 7762278
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttc 158  Q
    ||||||||| ||||| | ||||||||||||||||| || || || ||| |||||||||| || | |||||||| ||| ||||||||| ||||||    
T  7762370 tatcaatgagttctt-acaaagagatacaaaagagttacaagaaattagcttcaacaagttcacaaagaacaaccctaatttctaccctttttc 7762278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 46173462 - 46173371
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccattttt 157  Q
    ||||||||||||||| | ||||||||||||| | | || || || ||| ||||||||||||| | |||||||| ||| |||||||||| ||||    
T  46173462 tatcaatgaattctt-acaaagagatacaaatgggttacaagaaattagcttcaacaagctcacaaagaacaaccctaatttctaccaatttt 46173371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 39127654 - 39127579
Alignment:
Q  64 ttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaac 139  Q
    |||||||||| || ||||  || |||||||||| | |||||| || ||| ||||||||||||| ||||||||||||    
T  39127654 ttatcaatgagttatttacgaaaagatacaaaaaaactataagaaattagcttcaacaagctcaccaagaacaaac 39127579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 34491317 - 34491232
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||| ||| |||||||||    
T  34491317 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaccctaatttctacc 34491232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 54739016 - 54739108
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaac-cttatttctaccattttt 157  Q
    ||||||||| ||||||| | ||||||| ||||||| || | ||||| |  |||||||||||| | |||||||||| || |||||||||||||||    
T  54739016 tatcaatgagttctttacagagagatataaaagagttacataaatt-agtttcaacaagctcacaaagaacaaacactaatttctaccattttt 54739108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 46860562 - 46860494
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||||||| | | || || || ||| ||||||||||||| | |||||||||||| |||||||||    
T  46860562 aaagagatacaaatgggttacaagaaattagcttcaacaagctcacaaagaacaaacctaatttctacc 46860494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 75 - 246
Target Start/End: Complemental strand, 41446235 - 41446065
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtg 174  Q
    ||||||| ||||||||||||||| | ||   ||| ||| ||||||||||||||| |||||||||| | ||||||||| ||||| ||| ||||||||||||    
T  41446235 ttctttataaagagatacaaaagggttacttaaaattagcttcaacaagctctcaaagaacaaacataatttctacctttttttcgaatctctttccgtg 41446136  T
Q  175 accaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaagaatctcactcaaa 246  Q
    |  ||||| ||| ||||||| |||| ||| |  | |||||||||| || |||||| |||||| |||| ||||    
T  41446135 attaagaggctcaatgattt-tcactcaccaagtatttacaattgttttccaacctaagaatttcacccaaa 41446065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 41454340 - 41454155
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| ||||||| ||| | ||||||||||| |   | || ||| ||||||||||||||| || |||||| || ||||||||||||||| ||| ||    
T  41454340 tatcaatgagttctttacaaatatatacaaaagagttgctagaaattagcttcaacaagctctcaaaaaacaaatctaatttctaccattttt-cgaatc 41454242  T
Q  165 tctttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaagaatctcactcaaaaaactc 252  Q
    | ||||| ||| ||||| |||| |||| ||    |||  ||| |||  ||||||| ||||||||||||||||||||||||||| ||||    
T  41454241 tttttccatgatcaagatactcaatgaatttattcac-taaggtgtagacaattgtttcccaacccaagaatctcactcaaaacactc 41454155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 42261548 - 42261639
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    ||||||||| | ||||| ||||| ||||||||||| || || || ||| |||||||||||||||||||||||||| | |||||||| |||||    
T  42261548 tatcaatgagtactttacaaagatatacaaaagagttacaagaaattagcttcaacaagctctccaagaacaaacttaatttctacgatttt 42261639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 24398164 - 24398085
Alignment:
Q  64 ttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacctta 143  Q
    |||||||||| ||||||| ||||||||||||||| | || || || ||| ||||||||||||| | ||||||||||||||    
T  24398164 ttatcaatgagttctttacaaagagatacaaaagggttacaagaaattagcttcaacaagctcacaaagaacaaacctta 24398085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 30218107 - 30218193
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    |||||||||||| |||| ||||||||||||||  | || || || ||| |||||| ||||||||||||||||||||| | |||||||    
T  30218107 tatcaatgaattatttacaaagagatacaaaatggttacaagaaattagcttcaataagctctccaagaacaaacctaacttctacc 30218193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 34811284 - 34811400
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| ||  ||| ||||||||| ||||||| || || || ||| ||||||||||||||| |||| ||| | | ||||||||||||||| | | ||    
T  34811284 tatcaatgagtttcttacaaagagatataaaagagttacaataaattagcttcaacaagctctctaagagcaatcttaatttctaccattttttcaaatc 34811383  T
Q  165 tctttccgtgaccaaga 181  Q
    ||||||| || ||||||    
T  34811384 tctttccatggccaaga 34811400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 24197954 - 24197873
Alignment:
Q  114 cttcaacaagctctccaagaacaaacctta-tttctaccatttttccgattctctttccgtgaccaagagactcgatgattt 194  Q
    |||||||||| |||||||||| |||| ||| |||||||| |||| || | |||||| ||||||||||||||| | |||||||    
T  24197954 cttcaacaagttctccaagaaaaaactttaatttctacccttttcccaaatctcttcccgtgaccaagagacccaatgattt 24197873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 43406007 - 43405895
Alignment:
Q  131 agaacaaaccttatttctaccatttttccgattctctttccgtgaccaagaga--ctcgatgatttctcacacacaagatgtttacaattgcttcccaac 228  Q
    |||||||| || | || |||||||||| ||| ||||| ||||||| |||||||  ||| |||||||| | |  ||||  |||||||||||| ||| ||||    
T  43406007 agaacaaatctaaattttaccattttttcgaatctctatccgtgatcaagagagactcaatgatttcactcttacaaagtgtttacaattgtttctcaac 43405908  T
Q  229 ccaagaatctcac 241  Q
    |||||||||||||    
T  43405907 ccaagaatctcac 43405895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 17057432 - 17057526
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta-ccatttttcc 159  Q
    ||||||||| ||||| | ||||||||||||| ||| || ||||| ||| ||||||||||||  | |||||||| ||| ||||||| ||||||||||    
T  17057432 tatcaatgagttctt-acaaagagatacaaatgagttacaaaaaattagcttcaacaagcttgcaaagaacaaccctaatttctacccatttttcc 17057526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 17085415 - 17085509
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta-ccatttttcc 159  Q
    ||||||||| ||||| | ||||||||||||| ||| || ||||| ||| ||||||||||||  | |||||||| ||| ||||||| ||||||||||    
T  17085415 tatcaatgagttctt-acaaagagatacaaatgagttacaaaaaattagcttcaacaagcttgcaaagaacaaccctaatttctacccatttttcc 17085509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 2334481 - 2334566
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||||||| ||  | || ||| |||||||||| || | |||||||| |||||||||||||    
T  2334481 tatcaatgagttctt-acaaagagatacaaaagagttactagaaattagcttcaacaagttcacaaagaacaacccttatttctacc 2334566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 33648277 - 33648185
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaa-ccttatttctaccatttt 156  Q
    ||||||||| ||||||| ||||| ||||||||| | || |  || ||| ||||||||||||| | ||||||||| ||| |||| |||||||||    
T  33648277 tatcaatgagttctttacaaagaaatacaaaagggttacaggaaattagcttcaacaagctcacaaagaacaaaccctaatttttaccatttt 33648185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 36205744 - 36205820
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||||||||||||| || || || ||| |||  ||||| || | |||||||| ||| |||||||||||||||||    
T  36205744 aaagagatacaaaagagttacaagaaattagctttgacaagttcacaaagaacaaccctaatttctaccatttttcc 36205820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 35616275 - 35616129
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctac-catttttccgatt 163  Q
    ||||||||| ||||||| ||||| ||||||||| | || || || ||||||| ||| |||||||||||||||||||| |||||||| ||||| ||  | |    
T  35616275 tatcaatgagttctttacaaagaaatacaaaagggttacaagaaattaacttaaacgagctctccaagaacaaacctaatttctactcatttctc--aat 35616178  T
Q  164 ctctttccgtgaccaagagactcgatgatttctcacacacaagatgttt 212  Q
    ||||| |||||| |||||||||| |||||||| | ||| |||| |||||    
T  35616177 ctcttcccgtgaacaagagactcaatgatttcactcacccaaggtgttt 35616129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 316869 - 316777
Alignment:
Q  64 ttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    |||||||||| ||||||| |||||||||||||||   || || || ||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  316869 ttatcaatgagttctttacaaagagatacaaaaggattacaagaaattagcttcaacaagctctccaagaacaaacctaatttctaccttttt 316777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 8038292 - 8038172
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtg 174  Q
    |||||||||||| |||||||||||| |  || || ||| |||||| ||||||||||||  ||| ||| |||||||||||||||  || ||||||| ||||    
T  8038292 ttctttaaaaagtgatacaaaagagttgcaagaagttagcttcaagaagctctccaagggcaatcctaatttctaccatttttttgaatctcttttcgtg 8038193  T
Q  175 accaagagactcgatgatttc 195  Q
    ||||| |||||  ||||||||    
T  8038192 accaaaagactaaatgatttc 8038172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 246
Target Start/End: Complemental strand, 32609641 - 32609456
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaac----cttatttctaccatttttccg 160  Q
    ||||||| | ||||||| ||||| ||||||||||| || || || ||||||||||||| ||||| ||||| ||||     | ||||||||| |||| ||     
T  32609641 tatcaataagttctttacaaagaaatacaaaagagttacaagaaattaacttcaacaaactctcaaagaataaacttaattaatttctacccttttacca 32609542  T
Q  161 attctctttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaagaatctcactcaaa 246  Q
    | ||||||| |||| ||||||||||| ||   ||| | || ||||| || ||||||||| |||| |||||||||||||||| ||||    
T  32609541 aatctcttttcgtggccaagagactcaatatattcactcatacaagttgattacaattgtttcctaacccaagaatctcacccaaa 32609456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 10700690 - 10700804
Alignment:
Q  44 agagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacctta 143  Q
    |||||||||||| | |||   ||||||||| ||||||  ||||||||||||||  | ||||| |||| | ||||||||||||||| |||||||||||| |    
T  10700690 agagagatctctccacttcactatcaatgagttctttttaaagagatacaaaaatgttataagaatt-agcttcaacaagctctctaagaacaaacctaa 10700788  T
Q  144 tttctaccatttttcc 159  Q
    |||||||| |||||||    
T  10700789 tttctaccttttttcc 10700804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 32579328 - 32579157
Alignment:
Q  67 tcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctc 166  Q
    ||||||| || |||| ||||| ||||| ||||| || || || |||  ||||| ||||||||||| || |||||| ||| | |||| ||| |||| ||||    
T  32579328 tcaatgagttatttacaaagacatacataagagttacaagaaattagtttcaataagctctccaaaaataaacctaattacaaccagtttaccgaatctc 32579229  T
Q  167 tttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaagaatct 238  Q
    ||   ||| ||||||||||| |||||||| |  |  |||| |||||||||||  ||| ||||||||||||||    
T  32579228 ttcatgtggccaagagactcaatgatttcacttatccaaggtgtttacaattatttctcaacccaagaatct 32579157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 4160688 - 4160646
Alignment:
Q  114 cttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  4160688 cttcaacaagttctccaagaacaaacctaatttctaccatttt 4160646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 10054879 - 10054964
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||| ||| ||||||||||||||| | ||||| || ||| ||||||||| |||| ||||||||||| | |||||||||    
T  10054879 tatcaatgagttcattacaaagagatacaaaag-gttataagaaattagcttcaacaaactcttcaagaacaaacataatttctacc 10054964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 22097968 - 22097846
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| || |||| ||| ||||||||  | | ||||| || |||||||||||||  ||||||||||||| ||| ||||||||| |||||| || |     
T  22097968 tatcaatgagttttttacaaatagatacaa--gggttataagaaattaacttcaacaaattctccaagaacaaccctaatttctaccctttttcggact- 22097872  T
Q  165 tctttccgtgaccaagagactcgatgatttct 196  Q
          ||||||||||||||||||||||||||    
T  22097871 ------cgtgaccaagagactcgatgatttct 22097846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 241
Target Start/End: Original strand, 32576376 - 32576536
Alignment:
Q  82 aaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaaga 181  Q
    |||||||||||||||  | |||||  | ||| |||||||||||| |||| ||||||   | ||||||| |||||| |||| ||||||   |||| |||||    
T  32576376 aaaagagatacaaaatggttataagtaattagcttcaacaagctttccatgaacaattataatttctatcattttcccgaatctcttattgtgatcaaga 32576475  T
Q  182 gactcgatgatttctcacacaca--agatgtttacaattgcttcccaacccaagaatctcac 241  Q
    ||||  ||||||| |||| ||    || |||||||||||| |||||||||||||||||||||    
T  32576476 gacttaatgattt-tcactcatcttaggtgtttacaattgtttcccaacccaagaatctcac 32576536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 32583345 - 32583517
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattc 164  Q
    ||||||||| ||||||| ||| ||||||||||||| || | | | ||| ||||||||| || ||||||||||| | | ||||||| |||||| | || |     
T  32583345 tatcaatgagttctttacaaaaagatacaaaagagatacacataattagcttcaacaacctttccaagaacaatcataatttctatcattttcctgaatg 32583444  T
Q  165 tctttccgtgaccaagagactcgatgatttctcacaca--caagatgtttacaattgcttcccaacccaagaat 236  Q
    ||||  || || ||| |||||||||||||| |||| ||    |||||| |||||||| |||| |||||||||||    
T  32583445 tcttctcgcgatcaaaagactcgatgattt-tcactcatctgagatgtgtacaattgtttcctaacccaagaat 32583517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 13239856 - 13239765
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccattttt 157  Q
    ||||||||| ||||| | ||||||||||||||||| || || || ||| |||||||||| || | ||||| || ||| |||||||||||||||    
T  13239856 tatcaatgagttctt-acaaagagatacaaaagagttacaagaaattagcttcaacaagttcacaaagaaaaaccctaatttctaccattttt 13239765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 3326018 - 3325927
Alignment:
Q  66 atcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccattttt 157  Q
    |||| ||| ||||||| ||||||||||| ||  | || || || ||| |||||||||||||| |||||||||| || ||||||||| |||||    
T  3326018 atcattgagttctttacaaagagatacacaatggttacaagaaattagcttcaacaagctcttcaagaacaaaactaatttctacctttttt 3325927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 16641017 - 16641092
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaac-cttatttctaccattttt 157  Q
    ||||||||||||||||| ||| | || | | ||||||||||||| | |||||||||| || |||||||||||||||    
T  16641017 aaagagatacaaaagagttatcagaaatcagcttcaacaagctcacaaagaacaaacactaatttctaccattttt 16641092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 33906093 - 33906179
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||||| |||||||||||||||   || || || ||| |||| |||||||||||||| || ||||| |||| ||||    
T  33906093 tatcaatgagttctttacaaagagatacaaaaggattacaagaagttagcttcgacaagctctccaagcactaacctaatttatacc 33906179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 40147366 - 40147281
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||| ||| |||||||||    
T  40147366 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagctcacgaagaacaaccctaatttctacc 40147281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 14689492 - 14689581
Alignment:
Q  68 caatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccattttt 157  Q
    |||| |||| |||| ||||||||||||||    || ||||| ||| ||||||||||| ||||| |||||||| | |||||||||| ||||    
T  14689492 caataaattatttacaaagagatacaaaaatattacaaaaaattagcttcaacaagcactccatgaacaaacataatttctaccaatttt 14689581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 42310015 - 42310083
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||||||||||| || || || ||| ||||||||||||| | |||| ||||| | |||||||||    
T  42310015 aaagagatacaaaagagttacaagaaattagcttcaacaagctcacaaagatcaaacttgatttctacc 42310083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 4535519 - 4535630
Alignment:
Q  41 ggaagagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacc 140  Q
    ||||||||||||||| | ||||  ||||||||| ||||||| ||||||||||||||  | || || || || ||||||| |||||||||||||||||||     
T  4535519 ggaagagagatctctccacttaactatcaatgagttctttacaaagagatacaaaaatgttacaagaaattgacttcaataagctctccaagaacaaact 4535618  T
Q  141 ttatttctacca 152  Q
    | ||||||||||    
T  4535619 taatttctacca 4535630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 6808554 - 6808482
Alignment:
Q  69 aatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacct 141  Q
    ||||| ||||||| ||||||||||||||||| || || || ||| ||||||||||||||||||||||||||||    
T  6808554 aatgagttctttacaaagagatacaaaagagttacaagaagttagcttcaacaagctctccaagaacaaacct 6808482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 33776005 - 33775884
Alignment:
Q  75 ttctttaaaaagagat-acaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgt 173  Q
    ||||||| |||||||| ||||||||  || ||||| ||| |||||| ||| ||||||||| ||| ||| ||||||| |||||||| || | |||| ||||    
T  33776005 ttctttacaaagagattacaaaagat-tacaaaaaattagcttcaagaagttctccaagagcaatcctaatttctatcatttttctgaatatctt-ccgt 33775908  T
Q  174 gaccaagagactcgatgatttctc 197  Q
    ||||||||||||| ||||||||||    
T  33775907 gaccaagagactcaatgatttctc 33775884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 22079422 - 22079328
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||||| ||||||| ||||||||||||||  | || || || ||| ||| ||||||||| | |||||||||| | |||||||||||||||||    
T  22079422 tatcaatgagttctttacaaagagatacaaaatggttacaagaaattagctttaacaagctcacaaagaacaaacataatttctaccatttttcc 22079328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 12318564 - 12318671
Alignment:
Q  44 agagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacctta 143  Q
    ||||||||||||  ||||   ||||||||| ||||| || |||| ||||||||  | || || || ||| ||||||||||||||||| |||||||||| |    
T  12318564 agagagatctctctgcttcagtatcaatgagttcttaaagaagacatacaaaatggttacaagaaattagcttcaacaagctctccatgaacaaacctaa 12318663  T
Q  144 tttctacc 151  Q
    ||||||||    
T  12318664 tttctacc 12318671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 16914237 - 16914312
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataa-aaatttaacttcaacaagctctccaagaacaaac 139  Q
    ||||||||| ||||||| ||||||||||||||| | || || ||| ||| |||||||| |||||||||||||||||    
T  16914237 tatcaatgagttctttacaaagagatacaaaagggttagaagaaacttagcttcaacaggctctccaagaacaaac 16914312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 9109492 - 9109573
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    ||||||| ||||||||||||||| | || || || |||||||||||||| |||||||| | |||| | |||||| |||||||    
T  9109492 ttctttacaaagagatacaaaagggttacaagaaattaacttcaacaagttctccaagtaaaaacttaatttcttccatttt 9109573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 2926611 - 2926520
Alignment:
Q  68 caatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    |||||||||| ||  |||||||| |||||  | || || || ||||||| |||||| ||| |||| |||||||| |||||||||||||||||    
T  2926611 caatgaattcgtttcaaagagatgcaaaaaggttacaataaattaactttaacaagttcttcaagcacaaacctaatttctaccatttttcc 2926520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 11348803 - 11348710
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||||| ||||| | ||||||||||||| | | || || || ||| ||||||||||||| | |||||||| ||| |||||||||| ||||||    
T  11348803 tatcaatgagttctt-agaaagagatacaaatgggttacaagaaattagcttcaacaagctcacaaagaacaaccctaatttctaccaattttcc 11348710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 15820412 - 15820327
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| ||||||||||||||| | | || || || ||| ||||||||||||| | |||||||||||| |||| ||||    
T  15820412 tatcaatgagttctt-aaaaagagatacaaatgtgttacaagaaattagcttcaacaagctcacaaagaacaaacctaatttttacc 15820327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 41135947 - 41135833
Alignment:
Q  44 agagagatctcttcgcttacttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaacctta 143  Q
    ||||||||||||  ||||   |||||| || ||||||| ||| |||||||||||   || || || |||||||||| ||| ||| |||||||||| || |    
T  41135947 agagagatctctctgcttcagtatcaacgagttctttacaaatagatacaaaaggtttacaagaaattaacttcaaaaagttcttcaagaacaaatctaa 41135848  T
Q  144 tttctaccatttttc 158  Q
    |||||||| ||||||    
T  41135847 tttctaccctttttc 41135833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 42298038 - 42298131
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | || ||||| ||| |||||||||| ||||||    
T  42298038 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaaaaacaaccctaatttctaccaattttcc 42298131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 3460792 - 3460707
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaac-cttatttctaccatttttcc 159  Q
    ||||||| ||||| ||||||||| | || || || ||| ||||||||||||| | |||||||||| || ||||||||| |||||||    
T  3460792 ttctttacaaagatatacaaaagggttacaataaattagcttcaacaagctcacaaagaacaaactctaatttctaccctttttcc 3460707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 31649680 - 31649611
Alignment:
Q  143 atttctaccatttttccgattctctttccgtgaccaagagactcgatgatttctcacacacaagatgttt 212  Q
    ||||||||||||||||| | | ||||   ||||||||||||||| ||||||| || ||| ||||||||||    
T  31649680 atttctaccatttttccaaatatcttcatgtgaccaagagactcaatgatttatcgcactcaagatgttt 31649611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 10925331 - 10925236
Alignment:
Q  65 tatcaatgaattctt--taaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta-ccattttt 157  Q
    |||||||||||||||  || ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||| | | ||||||| ||||||||    
T  10925331 tatcaatgaattcttcttacaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaccataatttctatccattttt 10925236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 490383 - 490474
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    ||||||||| | ||||| ||||| ||||||||||| || || || ||| |||||||||||||||||||||||||| | |||||||| |||||    
T  490383 tatcaatgagtactttacaaagatatacaaaagagttacaagaaattagcttcaacaagctctccaagaacaaacttaatttctacgatttt 490474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 43363556 - 43363627
Alignment:
Q  85 agagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    ||||||||||||||| || || || |||  ||||||||||||||||||||||||||| ||||||||||||||    
T  43363556 agagatacaaaagagttacaataaattagtttcaacaagctctccaagaacaaacctaatttctaccatttt 43363627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 5116710 - 5116625
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctac 150  Q
    ||||||||| ||||||| |||||||||||||||   || || || ||| ||||||||| || ||||||||||||||| ||||||||    
T  5116710 tatcaatgagttctttacaaagagatacaaaaggtttacaataaattatcttcaacaaactatccaagaacaaacctaatttctac 5116625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 26639402 - 26639335
Alignment:
Q  89 atacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttt 156  Q
    ||||||||| | || || || ||||| ||||||| ||||||||||||| |||| ||||||||||||||    
T  26639402 atacaaaagggttacaagaaattaacatcaacaaactctccaagaacatacctaatttctaccatttt 26639335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 2361035 - 2361120
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||| ||| |||||||||    
T  2361035 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaccctaatttctacc 2361120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 29608842 - 29608757
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||| ||| |||||||||    
T  29608842 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaccctaatttctacc 29608757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 4253590 - 4253683
Alignment:
Q  64 ttatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaa-ccttatttctaccatttt 156  Q
    |||||||||| ||||||  ||||||||| ||||| | || |  || ||| ||||||||||||| | ||||||||| ||| ||||||||||||||    
T  4253590 ttatcaatgagttctttccaaagagatataaaagggttacatgaaattagcttcaacaagctcacaaagaacaaaccctaatttctaccatttt 4253683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 1113762 - 1113679
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttcta 149  Q
    ||||||||| ||||| | ||||||||||||| | | ||||| || ||| ||||||||||||| | |||||||| ||| |||||||    
T  1113762 tatcaatgagttctt-acaaagagatacaaatgggttataagaaattagcttcaacaagctcacaaagaacaaccctaatttcta 1113679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 3904679 - 3904771
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaa-ccttatttctaccatttt 156  Q
    ||||||||| ||||||| |||||||| |||||| | || || || |||  ||||| | |||||| ||||||||| ||| ||||||||||||||    
T  3904679 tatcaatgagttctttacaaagagatgcaaaagtgttacaagaaattacattcaataggctctcaaagaacaaaacctaatttctaccatttt 3904771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 22328471 - 22328527
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaac 139  Q
    ||||||||||||||||| || || || ||| ||||||||||||| | ||||||||||    
T  22328471 aaagagatacaaaagagttacaagaaattagcttcaacaagctcacaaagaacaaac 22328527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 23555145 - 23555054
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccattttt 157  Q
    ||||||||| ||||| | |||||| |||||||| | || || || ||| |||||||||| || | |||||||| ||| |||||||||||||||    
T  23555145 tatcaatgagttctt-acaaagaggtacaaaagtgttacaagaaattagcttcaacaagttcacaaagaacaaccctaatttctaccattttt 23555054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 27073912 - 27073828
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||| ||||||||||||||||| || || || |||||||||| || |||   | ||||||| | ||||||||||| ||||||    
T  27073912 ttctttacaaagagatacaaaagagttacaagaaattaacttcaataaactcataacgaacaaaacatatttctaccaattttcc 27073828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 27204401 - 27204485
Alignment:
Q  75 ttctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||| ||||||||||||||||| || || || |||||||||| || |||   | ||||||| | ||||||||||| ||||||    
T  27204401 ttctttacaaagagatacaaaagagttacaagaaattaacttcaataaactcataacgaacaaaacatatttctaccaattttcc 27204485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 48599414 - 48599482
Alignment:
Q  83 aaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||| ||| |||||||||    
T  48599414 aaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaccctaatttctacc 48599482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 7597720 - 7597647
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaa 138  Q
    |||||||| |||||||| |||||||||||||||   ||||| || ||| |||||||||||||||||||||||||    
T  7597720 tatcaatgcattctttacaaagagatacaaaaggattataagaaattagcttcaacaagctctccaagaacaaa 7597647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 32902236 - 32902322
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||||||||||| |||||||||||||| || || || || ||| ||||||||   |||||| |||||||| | |||||||||    
T  32902236 tatcaatgaattctttagaaagagatacaaaaaagttacaagaaattagcttcaacagagtctccatgaacaaacataatttctacc 32902322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 3231859 - 3232027
Alignment:
Q  66 atcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaa-ccttatttctaccatttttccgattc 164  Q
    |||||| | ||||||| ||||||||||||||  | || ||||| ||| ||||||||||||| | ||||||||| ||| ||||||| ||||||||  | ||    
T  3231859 atcaataagttctttacaaagagatacaaaatggttaaaaaaaattagcttcaacaagctcacgaagaacaaagcctaatttcta-catttttctcaatc 3231957  T
Q  165 tctttccgtgaccaagagactcgatgatttctcacacacaagatgtttacaattgcttcccaacccaaga 234  Q
    |||| |   || |||||||||| |||| ||| | ||| |||| ||||||| | || |||||||| |||||    
T  3231958 tcttcctaagaacaagagactcaatgaattcacccacccaaggtgtttactaatgtttcccaactcaaga 3232027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 1292526 - 1292611
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| ||||||||||||| | |||||||||| | |||||||||    
T  1292526 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaacttaatttctacc 1292611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 4162602 - 4162517
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctacc 151  Q
    ||||||||| ||||| | ||||||||||||| ||| || || || ||| |||||||||| |||| |||||||||||| | |||||||    
T  4162602 tatcaatgagttctt-acaaagagatacaaatgagttacaagaaattagcttcaacaagttctcaaagaacaaacctaacttctacc 4162517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 34256570 - 34256663
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    ||||||||| ||||| | ||||||||||||||| | || || || |||||||  ||||| || | |||||||| ||| |||||||||||||||||    
T  34256570 tatcaatgagttctt-acaaagagatacaaaagggttacaagaaattaactttgacaagttcacaaagaacaaccctaatttctaccatttttcc 34256663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 18078 - 18159
Alignment:
Q  78 tttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaaaccttatttctaccatttttcc 159  Q
    |||| ||||||||||||| ||| || || || ||| ||||||||||||| | | |||||| ||| |||||||||| ||||||    
T  18078 tttacaaagagatacaaatgagttacaagaaattagcttcaacaagctcacaatgaacaaccctaatttctaccaattttcc 18159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 27505 - 27577
Alignment:
Q  65 tatcaatgaattctttaaaaagagatacaaaagagctataaaaatttaacttcaacaagctctccaagaacaa 137  Q
    ||||||| | || |||| ||||||||||||| ||| || || || ||| |||||||||||||| |||||||||    
T  27505 tatcaataagttatttacaaagagatacaaatgagttacaagaaattagcttcaacaagctcttcaagaacaa 27577  T

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