View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_26 (Length: 267)
Name: NF17309_low_26
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 12960337 - 12960572
Alignment:
| Q |
19 |
aacttgataattagagaaatttcttaaaagtnnnnnnnntaaaagagattaagtgtaggattttaattgtcctgcccaatgcgagataaggttagtccga |
118 |
Q |
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| T |
12960337 |
aacttggtaattagagaaatttcttaaaagtaaaaaaaataaaagagataaagtgtaggattttaattgtccttcccaatgcgagataaggttagtccga |
12960436 |
T |
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| Q |
119 |
ttaagatggtaacgacgattagggtatccttaaatccttcctcctttctttattggaattaaaacagttaccatcttcactctcatcttcccttgctatg |
218 |
Q |
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| T |
12960437 |
ttaagatggtaacgacgattagggtatccttgaatccatcctcctttctttattggaattaaaacagttaccatcttcactccaatcttcacttgctatg |
12960536 |
T |
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| Q |
219 |
ttttcaacatctttttccttaaccaccattatgaaac |
255 |
Q |
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| T |
12960537 |
-tttcagcatctttttccttaaccaccattataaaac |
12960572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 6887179 - 6887212
Alignment:
| Q |
72 |
tgtaggattttaattgtcctgcccaatgcgagat |
105 |
Q |
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| T |
6887179 |
tgtaggattttaattgtcctgcccaatgcgagat |
6887212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 20488525 - 20488577
Alignment:
| Q |
128 |
taacgacgattagggtatccttaaatccttcctcctttctttattggaattaa |
180 |
Q |
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| T |
20488525 |
taacgatgattagggtatccttaaatcctacgtaccttctttattggaattaa |
20488577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 24048419 - 24048368
Alignment:
| Q |
128 |
taacgacgattagggtatccttaaatccttcctcctttctttattggaattaa |
180 |
Q |
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| T |
24048419 |
taacgacaattagagtatccttaaatcctttctcc-ttctttgttggaattaa |
24048368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 34332702 - 34332778
Alignment:
| Q |
79 |
ttttaattgtcctgcccaatgcgagataaggttagtccgattaagatg-gtaacgacgattagggtatccttaaatc |
154 |
Q |
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||||||||||| |||| |||||||||| ||||| || |||| ||||| ||||| | ||||||||||||||| |||| |
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| T |
34332702 |
ttttaattgtcttgcctaatgcgagattaggttggtttgattcagatgcgtaacaaagattagggtatccttgaatc |
34332778 |
T |
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