View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_27 (Length: 263)
Name: NF17309_low_27
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 44975937 - 44975689
Alignment:
| Q |
1 |
tcccataataataccaaatcatccaaaacaacatatattccaaataaagaattaatgagatttaacatcacaaccaaagaggagagaagaaagagtcaac |
100 |
Q |
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| T |
44975937 |
tcccataataataccaaatcatccaaaacaacatatattccaaataaagaattaatgagatttaacatcacaaccaaagaggagagaagaaagagtcaac |
44975838 |
T |
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| Q |
101 |
tttctcactttgaaacaaactt--tgtttgtggctgcatgcatgtatttcagatcatgatgatatttatacactttatagaaaatcaaatgaaataacaa |
198 |
Q |
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||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975837 |
tttctaactttgaaacaaactttatgtttatggccgcatgcatgtatttcagatcatgatgatatttatacactttatagaaaatcaaatgaaataacaa |
44975738 |
T |
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| Q |
199 |
aaccagttcatacaaaagtaaggatcagaattgaagaaaattcataatt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975737 |
aaccagttcatacaaaagtaaggatcagaattgaagaaaattcataatt |
44975689 |
T |
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