View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_29 (Length: 257)
Name: NF17309_low_29
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34776014 - 34776256
Alignment:
| Q |
1 |
gttctttagacatgtggagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttct |
100 |
Q |
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| T |
34776014 |
gttctttagacatgtggagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttct |
34776113 |
T |
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| Q |
101 |
taacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtg |
200 |
Q |
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| T |
34776114 |
taacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaataaacgcgtt |
34776213 |
T |
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| Q |
201 |
ttcgagggtttggagtctcttgttgatgttggaggtggtactg |
243 |
Q |
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| T |
34776214 |
ttcgagggtttggagtctcttgttgatgttggaggtggtactg |
34776256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34784226 - 34784454
Alignment:
| Q |
1 |
gttctttagacatgtggagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttct |
100 |
Q |
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||||| |||||||||||| || |||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| | |||||||||||| |
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| T |
34784226 |
gttctatagacatgtggaagtcttcaaagaaatggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttct |
34784325 |
T |
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| Q |
101 |
taacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtg |
200 |
Q |
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| T |
34784326 |
taacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtg |
34784425 |
T |
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| Q |
201 |
ttcgagggtttggagtctcttgttgatgt |
229 |
Q |
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| T |
34784426 |
tttgagggtttggaatctcttgttgatgt |
34784454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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