View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17309_low_3 (Length: 481)

Name: NF17309_low_3
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17309_low_3
NF17309_low_3
[»] chr4 (21 HSPs)
chr4 (17-317)||(39331133-39331432)
chr4 (334-467)||(39331419-39331542)
chr4 (53-113)||(7616957-7617017)
chr4 (66-135)||(12922186-12922255)
chr4 (20-113)||(46804987-46805080)
chr4 (18-113)||(971887-971981)
chr4 (65-106)||(25855282-25855323)
chr4 (18-93)||(4161851-4161927)
chr4 (53-135)||(13834513-13834595)
chr4 (17-94)||(27395479-27395557)
chr4 (60-157)||(42375244-42375341)
chr4 (19-55)||(46433550-46433586)
chr4 (18-113)||(48973371-48973467)
chr4 (60-103)||(22467250-22467293)
chr4 (64-103)||(32934155-32934194)
chr4 (34-87)||(35075822-35075876)
chr4 (19-99)||(7912534-7912615)
chr4 (63-112)||(21241804-21241853)
chr4 (80-160)||(24806760-24806840)
chr4 (82-155)||(26499279-26499352)
chr4 (65-113)||(51226123-51226171)
[»] scaffold0687 (1 HSPs)
scaffold0687 (18-113)||(1619-1715)
[»] chr8 (15 HSPs)
chr8 (18-113)||(7603935-7604031)
chr8 (53-135)||(4586770-4586852)
chr8 (60-113)||(40680074-40680127)
chr8 (22-106)||(41616690-41616775)
chr8 (54-113)||(21215940-21215999)
chr8 (45-103)||(29908950-29909009)
chr8 (18-103)||(42844884-42844970)
chr8 (53-103)||(7681014-7681064)
chr8 (53-155)||(8340310-8340411)
chr8 (65-135)||(42660085-42660155)
chr8 (61-94)||(6049172-6049205)
chr8 (65-94)||(35447600-35447629)
chr8 (22-94)||(44362626-44362699)
chr8 (53-113)||(12530791-12530851)
chr8 (65-113)||(18080463-18080511)
[»] chr7 (15 HSPs)
chr7 (53-111)||(8929495-8929553)
chr7 (60-113)||(23441495-23441548)
chr7 (49-116)||(20889211-20889278)
chr7 (53-103)||(46720021-46720071)
chr7 (64-145)||(12849733-12849814)
chr7 (64-113)||(23457830-23457879)
chr7 (60-113)||(23474549-23474602)
chr7 (77-157)||(39608609-39608689)
chr7 (64-147)||(8062885-8062968)
chr7 (53-103)||(10228752-10228802)
chr7 (53-103)||(24127206-24127256)
chr7 (60-113)||(23532887-23532940)
chr7 (65-94)||(29197172-29197201)
chr7 (71-103)||(30793161-30793193)
chr7 (67-107)||(43576486-43576526)
[»] chr1 (13 HSPs)
chr1 (18-154)||(33747270-33747407)
chr1 (18-135)||(27900871-27900989)
chr1 (63-113)||(38445183-38445233)
chr1 (65-113)||(29795276-29795324)
chr1 (71-155)||(39162406-39162490)
chr1 (60-107)||(21379283-21379330)
chr1 (63-106)||(31415068-31415111)
chr1 (69-108)||(43115654-43115693)
chr1 (65-100)||(45679559-45679594)
chr1 (53-103)||(51849558-51849608)
chr1 (80-113)||(2262183-2262216)
chr1 (53-94)||(10018969-10019010)
chr1 (17-104)||(45679705-45679793)
[»] chr3 (13 HSPs)
chr3 (60-103)||(47944560-47944603)
chr3 (18-157)||(14984405-14984544)
chr3 (18-113)||(23195690-23195786)
chr3 (49-113)||(45681387-45681451)
chr3 (53-103)||(47944335-47944385)
chr3 (60-105)||(32536464-32536509)
chr3 (82-158)||(7672334-7672410)
chr3 (64-155)||(30843819-30843910)
chr3 (55-105)||(39336789-39336839)
chr3 (18-55)||(20936486-20936523)
chr3 (18-55)||(29079235-29079272)
chr3 (53-106)||(52330622-52330675)
chr3 (53-105)||(22235487-22235539)
[»] chr2 (11 HSPs)
chr2 (18-155)||(40124264-40124402)
chr2 (18-109)||(12676427-12676519)
chr2 (53-113)||(19206506-19206566)
chr2 (55-94)||(6686797-6686836)
chr2 (55-113)||(6788492-6788550)
chr2 (64-134)||(7165761-7165831)
chr2 (53-94)||(20966220-20966261)
chr2 (69-113)||(1517582-1517626)
chr2 (69-113)||(18858011-18858055)
chr2 (65-113)||(18903185-18903233)
chr2 (67-103)||(29488709-29488745)
[»] chr6 (9 HSPs)
chr6 (18-103)||(9307432-9307517)
chr6 (60-135)||(9307250-9307325)
chr6 (65-110)||(31315298-31315343)
chr6 (53-105)||(25085089-25085141)
chr6 (65-104)||(9762629-9762668)
chr6 (20-112)||(4964258-4964351)
chr6 (70-107)||(30000001-30000038)
chr6 (53-106)||(31803956-31804009)
chr6 (53-109)||(28995539-28995595)
[»] scaffold0050 (1 HSPs)
scaffold0050 (53-101)||(81349-81397)
[»] chr5 (14 HSPs)
chr5 (20-103)||(23159081-23159165)
chr5 (53-113)||(42932827-42932887)
chr5 (64-109)||(296546-296591)
chr5 (69-105)||(3599845-3599881)
chr5 (67-106)||(13200852-13200891)
chr5 (53-135)||(8206297-8206379)
chr5 (70-112)||(37269117-37269159)
chr5 (80-112)||(9577097-9577129)
chr5 (28-99)||(14461750-14461822)
chr5 (67-99)||(19342534-19342566)
chr5 (67-155)||(26675287-26675375)
chr5 (67-155)||(26946895-26946983)
chr5 (65-145)||(27001402-27001482)
chr5 (53-109)||(42525231-42525287)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 39331133 - 39331432
Alignment:
Q  17 aacaatattaatgaaacattttaatatcatgaactatttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggt 116  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39331133 aacaatattaatgaagcattttaatatcatggactatttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggt 39331232  T
Q  117 cactgcttattacacattcgagaaccaaaatgattattatctcattccacctacgtaccatgcaaatggccattgcttgccacttcnnnnnnngtgtgta 216  Q
    | |||||||||||| |||| |||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||       |||||||    
T  39331233 cgctgcttattacaaattcaagaatcaaaatgattattattccattccacgtacgtaccatgcaaatggccattgcttgccacttc-ttttttgtgtgta 39331331  T
Q  217 aaacgattaggaaaggtactcgtatactattgtttgtagggttgtaaaattggagtaattagaaaaaagattaatattatttggtcttcaattcaatgac 316  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39331332 aaacgattaggaaaggtactcggatactattgtttggagggttgtaaaattggagtaattagaaaaaagattaatattatttggtcttcaattcaatgac 39331431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 334 - 467
Target Start/End: Original strand, 39331419 - 39331542
Alignment:
Q  334 tcaattcaatgacattggttaca--tgtttacagcttactcctagtagtagtatatcatttcatttcactaatatccactgaattgttttctgaccaata 431  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             
T  39331419 tcaattcaatgacattggttacacatgtttacagcttactcctagtagtagtatatcatttcatttcactaatat-cactgaattgttttc--------- 39331508  T
Q  432 tatagagaattgttgaggtttacagtatgtcatttc 467  Q
      ||||||| ||||||||||||||||||||||||||    
T  39331509 --tagagaaatgttgaggtttacagtatgtcatttc 39331542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 7616957 - 7617017
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  7616957 tttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacattaaaagactat 7617017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 12922255 - 12922186
Alignment:
Q  66 gtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattc 135  Q
    |||||||||||||||||||||| ||||||| ||||||| ||| ||||| || ||| ||||||||||||||    
T  12922255 gtgcacaatcaaaaactattttgaaatttcgatacattgaaatactattgtgactacttattacacattc 12922186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 46804987 - 46805080
Alignment:
Q  20 aatattaatgaaacattttaatatcatgaacta-tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    ||||||||||||| |||||||||||| | |||| |||||| ||||||| ||||||||| | || |||||||||||| |||| ||| |||||||||    
T  46804987 aatattaatgaaatattttaatatcagggactattttgaccaacgaag-gcacaatcagagacaattttaaaattttaatatattgaaagactat 46805080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 971981 - 971887
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaacta-tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||||||||  ||||||||  |||| |||||| ||| ||||||||||||||| |||||||| ||||||  ||||||| || ||||||    
T  971981 acaatattaatgaaacatt--aatatcatagactactttgactaacaaagtgcacaatcaaagactattttgaaattttgatacattgaatgactat 971887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 25855282 - 25855323
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaa 106  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  25855282 agtgcacaatcaaagactattttaaaatttcaatacattaaa 25855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 4161851 - 4161927
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaacta-tttgacaaacgaagtgcacaatcaaaaactattttaaaatt 93  Q
    |||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||| || ||||||| |||||||    
T  4161851 acaatattaatgaaacattttaatatcatagactattttgactaacaaaatgcacaattaataactattgtaaaatt 4161927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 13834513 - 13834595
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattc 135  Q
    |||||| || |||||| | ||||| | ||||||||||||||| |||||||||||||||| | || ||| || |||||||||||    
T  13834513 tttgactaatgaagtgtaaaatcagagactattttaaaattttaatacattaaaagactgttgtgactactcattacacattc 13834595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 27395557 - 27395479
Alignment:
Q  17 aacaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaattt 94  Q
    ||||||||||| | ||||||||||||||| | | ||||| ||| ||||||||| ||||||||| | |||||||||||||    
T  27395557 aacaatattaacgtaacattttaatatcaaggattattttgactaacgaagtgaacaatcaaatattattttaaaattt 27395479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 42375244 - 42375341
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattattatc 157  Q
    ||||||||||| |||||||||||| ||| ||||||| ||||||||||  | ||| ||  || || ||||||||||| | || |||||||| |||||||    
T  42375244 aacgaagtgcagaatcaaaaactactttgaaatttcgatacattaaagaattattgtggctactcattacacattcaataatcaaaatgactattatc 42375341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 46433550 - 46433586
Alignment:
Q  19 caatattaatgaaacattttaatatcatgaactattt 55  Q
    ||||||||||||||||||||||||||| |||||||||    
T  46433550 caatattaatgaaacattttaatatcaggaactattt 46433586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 48973371 - 48973467
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaacta-tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||| |||||||| |||| |||||| |||||  || ||| |||||||||||  |||||||| ||||||   |||||| |||||||||    
T  48973371 acaatattaatgaagcattttaacatcaagaactattttgattaatgaattgcacaatcaaggactattttgaaatttttgtacattgaaagactat 48973467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 22467293 - 22467250
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||    
T  22467293 aacgaagtgcacaattaaagactattttcaaatttcaatacatt 22467250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 32934155 - 32934194
Alignment:
Q  64 aagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  32934155 aagtgcacaatcaaaaactattttaaaattttgatacatt 32934194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 35075822 - 35075876
Alignment:
Q  34 attttaatatcatgaacta-tttgacaaacgaagtgcacaatcaaaaactatttt 87  Q
    |||||||| |||||||||| |||||| |||||||||||||||||| || ||||||    
T  35075822 attttaatgtcatgaactagtttgactaacgaagtgcacaatcaagaattatttt 35075876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 7912615 - 7912534
Alignment:
Q  19 caatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaata 99  Q
    ||||||||||||| ||||||||||| | | ||||||| ||| |  |||||||||||| | | ||||||| ||||||||||||    
T  7912615 caatattaatgaagcattttaatatgagggactattttgactagtgaagtgcacaattagagactatttcaaaatttcaata 7912534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 21241804 - 21241853
Alignment:
Q  63 gaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagacta 112  Q
    ||||||||||||| ||||||||||||||||||  |||||| ||| |||||    
T  21241804 gaagtgcacaatcgaaaactattttaaaattttgatacatcaaaggacta 21241853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 24806760 - 24806840
Alignment:
Q  80 actattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgaga-accaaaatgattattatctca 160  Q
    |||||||| |||||||||||||||||  |||||| || ||| |||||||| ||||| ||| |||||||||| ||||| ||||    
T  24806760 actattttcaaatttcaatacattaagggactattgtaactacttattacgcattc-agataccaaaatgactattacctca 24806840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 26499352 - 26499279
Alignment:
Q  82 tattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattatta 155  Q
    ||||||| ||||| |||||||||| ||| ||| || ||| ||| ||||||||||  |||||||||||| |||||    
T  26499352 tattttagaattttaatacattaagagattattgtgactactttttacacattcaggaaccaaaatgactatta 26499279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 51226123 - 51226171
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    ||||||||||||| ||| |||||| |||||| ||||||| |||||||||    
T  51226123 agtgcacaatcaagaacaattttagaatttcgatacattgaaagactat 51226171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 1715 - 1619
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    ||||||||||||| |||||| ||||| |   ||||||| ||| ||||||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  1715 acaatattaatgagacatttcaatattagagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactat 1619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 7604031 - 7603935
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    ||||||||||||| |||||| ||||| |   ||||||| ||| ||||||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  7604031 acaatattaatgagacatttcaatattagagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactat 7603935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 4586852 - 4586770
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattc 135  Q
    |||||| ||||||||||| ||||| | ||||||||||||||| |||||||||| ||||||| || ||| ||  ||||||||||    
T  4586852 tttgactaacgaagtgcaaaatcatagactattttaaaattttaatacattaagagactattgtaactactcgttacacattc 4586770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 40680127 - 40680074
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    ||||||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  40680127 aacgaagtgcacaatcataaactattttagaattttgatacattaaaagactat 40680074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 41616775 - 41616690
Alignment:
Q  22 tattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaa 106  Q
    ||||||| ||||||||||||||| |  ||||||| ||| ||||||||||| ||  ||| | |||||||||||||||||||||||||    
T  41616775 tattaataaaacattttaatatcgtagactattttgactaacgaagtgcataacaaaagattattttaaaatttcaatacattaaa 41616690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 21215999 - 21215940
Alignment:
Q  54 ttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    ||||| ||||||||||||||||||  |||||||| ||||||||||||||| || ||||||    
T  21215999 ttgactaacgaagtgcacaatcaatgactattttgaaatttcaatacattgaaggactat 21215940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 29909009 - 29908950
Alignment:
Q  45 atgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    ||||||||||| ||| ||| || ||||||||||| |||||||||||||||||||||||||    
T  29909009 atgaactattttgactaaccaaatgcacaatcaataactattttaaaatttcaatacatt 29908950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 42844970 - 42844884
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaacta-tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||  ||||| |||||||||  |||||  |||||||  |||||||    
T  42844970 acaatattaatgaaacattttaatatcaggaactattttgactaattaagtgtacaatcaaagcctattcgaaaattttgatacatt 42844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 7681014 - 7681064
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||| |||||| |||||||||||| |||||||||||||||  |||||||    
T  7681014 tttgactaacgaaatgcacaatcaaatactattttaaaattttgatacatt 7681064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 8340310 - 8340411
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgatta 152  Q
    |||||| | |||| |||||||||||||| |||||| || ||| | ||||||||| |||| | || ||| || |||| |||||| ||||||||||||| ||    
T  8340310 tttgactagcgaaatgcacaatcaaaaattattttgaattttga-tacattaaaggactgttgtgactactcattatacattcaagaaccaaaatgacta 8340408  T
Q  153 tta 155  Q
    |||    
T  8340409 tta 8340411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 42660085 - 42660155
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattc 135  Q
    |||||| ||||||| ||||||||||||| | |||||||||| |||||||  | ||| ||||| ||||||||    
T  42660085 agtgcataatcaaagactattttaaaatcttaatacattaagagactattctgactacttatgacacattc 42660155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 6049172 - 6049205
Alignment:
Q  61 acgaagtgcacaatcaaaaactattttaaaattt 94  Q
    ||||||||||||||||| ||||||||||||||||    
T  6049172 acgaagtgcacaatcaagaactattttaaaattt 6049205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 35447629 - 35447600
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaattt 94  Q
    ||||||||||||||||||||||||||||||    
T  35447629 agtgcacaatcaaaaactattttaaaattt 35447600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 44362626 - 44362699
Alignment:
Q  22 tattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaattt 94  Q
    ||||||||||| ||||||| || ||  ||||||| ||| |||||| | |||||||| |||||||||||||||||    
T  44362626 tattaatgaaatattttaacattatagactattttgactaacgaattacacaatcagaaactattttaaaattt 44362699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 12530791 - 12530851
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||| |||||  |||||||||| | | |||||||||||||| ||||||||||| |||||    
T  12530791 tttgactaacgagttgcacaatcagatattattttaaaatttcgatacattaaaaaactat 12530851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 18080463 - 18080511
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||||| |||||| ||||||  ||||||||| |||||||    
T  18080463 agtgcacaatcaaaaaatattttgaaattttgatacattaagagactat 18080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 8929553 - 8929495
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagact 111  Q
    |||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  8929553 tttgactaacaaagtgcaaaatcaaaaactattttaaaattttaatacattaaaagact 8929495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 23441548 - 23441495
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| || ||||||    
T  23441548 aacgaagtgcacaatcaataactattttaaaatttcgatacattgaaggactat 23441495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 20889278 - 20889211
Alignment:
Q  49 actatttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggt 116  Q
    |||||||||| |||| |||||||||| ||| |||||||||||||||| | ||||||| | ||||||||    
T  20889278 actatttgactaacgcagtgcacaattaaagactattttaaaatttcgacacattaatatactatggt 20889211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 46720021 - 46720071
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||| ||| ||||||||||||||| || |||||||||||||||||||||    
T  46720021 tttgactaacaaagtgcacaatcaaataccattttaaaatttcaatacatt 46720071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 12849733 - 12849814
Alignment:
Q  64 aagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaa 145  Q
    ||||||||||||| | ||||||||  |||||  ||||||||||||||||| || ||| || ||| ||||||| |||||||||    
T  12849733 aagtgcacaatcagagactattttgtaattttgatacattaaaagactattgtgactactcattgcacattcaagaaccaaa 12849814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 23457830 - 23457879
Alignment:
Q  64 aagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||| ||||||||||||||||| ||||||| || ||||||    
T  23457830 aagtgcacaatcaataactattttaaaatttcgatacattgaaggactat 23457879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 23474602 - 23474549
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||||||| ||||||||||||||||  ||||||| || ||||||    
T  23474602 aacgaagtgcacaatcaataactattttaaaattttgatacattgaaggactat 23474549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 39608609 - 39608689
Alignment:
Q  77 aaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattattatc 157  Q
    ||||||||||||||||||  ||||||| ||| ||||| || ||| ||  |||||||||| || || |||||||||||||||    
T  39608609 aaaactattttaaaattttgatacattgaaaaactattgtaactactccttacacattcaaggactaaaatgattattatc 39608689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 8062885 - 8062968
Alignment:
Q  64 aagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaat 147  Q
    ||||||| ||||| | ||||||||||||||| |||||||| | ||||||| || ||| ||  |||||||||| || ||||||||    
T  8062885 aagtgcaaaatcagatactattttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaat 8062968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 10228802 - 10228752
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||| |||||| |||||||||||| |||||||| ||||||| |||||||    
T  10228802 tttgactaacgaattgcacaatcaaagactattttgaaatttcgatacatt 10228752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 24127256 - 24127206
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||| ||||| |||||||||||| |||| ||||| ||||||||||||||    
T  24127256 tttgactaacgaggtgcacaatcaagaacttttttagaatttcaatacatt 24127206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 23532940 - 23532887
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||| ||||||||| ||||||||||||||||| |||| || || ||||||    
T  23532940 aacgaagtccacaatcaataactattttaaaatttcgataccttgaaggactat 23532887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 29197172 - 29197201
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaattt 94  Q
    ||||||||||||||||||||||||||||||    
T  29197172 agtgcacaatcaaaaactattttaaaattt 29197201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 30793161 - 30793193
Alignment:
Q  71 caatcaaaaactattttaaaatttcaatacatt 103  Q
    |||| ||||||||||||||||||||||||||||    
T  30793161 caattaaaaactattttaaaatttcaatacatt 30793193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 43576486 - 43576526
Alignment:
Q  67 tgcacaatcaaaaactattttaaaatttcaatacattaaaa 107  Q
    ||||||||||| ||||||||| |||||| ||||||||||||    
T  43576486 tgcacaatcaacaactatttttaaattttaatacattaaaa 43576526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 33747407 - 33747270
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggt 116  Q
    |||||||||||| | |||||||||||||   ||||||| ||| ||||||||||| ||||||| ||| |||| ||||||| ||||||| ||  ||||| ||    
T  33747407 acaatattaatggagcattttaatatcagagactattttgactaacgaagtgcagaatcaaatactgttttgaaatttcgatacattgaagaactattgt 33747308  T
Q  117 cactgcttattacacattcgagaaccaaaatgattatt 154  Q
     ||| ||| |||||||||| ||  ||||||| ||||||    
T  33747307 gactacttgttacacattcaaggtccaaaataattatt 33747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 27900871 - 27900989
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggt 116  Q
    |||||||||||||||||||||||  ||||| ||||||| ||| ||| || |||||||||| | ||||||||||| |||  ||||||| || ||||||  |    
T  27900871 acaatattaatgaaacattttaacgtcatggactatttcgactaactaattgcacaatcatagactattttaaattttttatacattgaaggactattct 27900970  T
Q  117 cactgcttattacacattc 135  Q
     ||| || |||||||||||    
T  27900971 gactactcattacacattc 27900989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 38445183 - 38445233
Alignment:
Q  63 gaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||||| ||||||||| |||||| |||||||||| ||||||    
T  38445183 gaagtgcacaatcaaagactattttagaatttcgatacattaaaggactat 38445233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 29795276 - 29795324
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||||| |||||||||||||||  ||| |||||||||||||    
T  29795276 agtgcacaatcaaatactattttaaaattttgatatattaaaagactat 29795324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 39162490 - 39162406
Alignment:
Q  71 caatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattatta 155  Q
    ||||||||||||||||| ||||||||||||||| ||  ||||| || | | || ||||| ||||| || |||||||||| |||||    
T  39162490 caatcaaaaactattttgaaatttcaatacattgaagtactattgtgattactcattacgcattcaaggaccaaaatgactatta 39162406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 21379330 - 21379283
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaa 107  Q
    ||||||||||||| |||||||||||||||| |||| |||| |||||||    
T  21379330 aacgaagtgcacattcaaaaactattttaatatttaaatatattaaaa 21379283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 31415068 - 31415111
Alignment:
Q  63 gaagtgcacaatcaaaaactattttaaaatttcaatacattaaa 106  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||    
T  31415068 gaagtacacaatcaaatactattttaaaatttaaatacattaaa 31415111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 43115693 - 43115654
Alignment:
Q  69 cacaatcaaaaactattttaaaatttcaatacattaaaag 108  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  43115693 cacaatcaaaaactattttaaaatttcaatatactaaaag 43115654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 45679594 - 45679559
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatac 100  Q
    |||||||||||||||||||||||||||||| |||||    
T  45679594 agtgcacaatcaaaaactattttaaaattttaatac 45679559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 51849558 - 51849608
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||| || |||||| ||||||| ||||||||||||||||| ||||||||    
T  51849558 tttgactaaagaagtgtacaatcacaaactattttaaaattttaatacatt 51849608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 2262183 - 2262216
Alignment:
Q  80 actattttaaaatttcaatacattaaaagactat 113  Q
    ||||||||||||||||||||||||||| ||||||    
T  2262183 actattttaaaatttcaatacattaaaggactat 2262216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 10018969 - 10019010
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaattt 94  Q
    |||||| || ||||| ||||||||||||||||||||||||||    
T  10018969 tttgactaaagaagtacacaatcaaaaactattttaaaattt 10019010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 45679705 - 45679793
Alignment:
Q  17 aacaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatta 104  Q
    |||||| ||||| ||| ||||||| || | | ||||||| ||| |||||| ||||||||||  ||||||||||||||||  ||||||||    
T  45679705 aacaattttaataaaatattttaacattagggactattttgactaacgaattgcacaatcatgaactattttaaaatttttatacatta 45679793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 47944560 - 47944603
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  47944560 aacgaagtgcacaatcaaagactattttaaaatttcaatacatt 47944603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 14984544 - 14984405
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggt 116  Q
    |||||||||| |||| |||||||| ||| ||||||||| ||| |||||||||||||||||   | |||||| ||||||| ||| ||| |  |||||| ||    
T  14984544 acaatattaacgaaatattttaatgtcaggaactattttgactaacgaagtgcacaatcagggagtattttgaaatttcgatatattgagggactattgt 14984445  T
Q  117 cactgcttattacacattcgagaaccaaaatgattattatc 157  Q
     ||| ||  |||||||||| || |||||||||| |||||||    
T  14984444 gactactcgttacacattc-aggaccaaaatgactattatc 14984405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 23195690 - 23195786
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactatttga-caaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||| |||| | |||||| ||||  ||||||||| | || ||| |||||||||| ||| ||||||||||||| |||||||| |||||||||    
T  23195690 acaatattaacgaaatactttaatgtcatagactatttgaactaatgaaatgcacaatcagaaattattttaaaattttaatacattgaaagactat 23195786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 45681387 - 45681451
Alignment:
Q  49 actatttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||| | | ||||||| ||||||  |||||||||||||||||||||||| |||||||||    
T  45681387 actatttgactagcaaagtgcataatcaaggactattttaaaatttcaatacatttaaagactat 45681451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 47944385 - 47944335
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||| ||| ||||||||||||||| |||||||||||||||| |||||||    
T  47944385 tttgactaacaaagtgcacaatcaaagactattttaaaatttcgatacatt 47944335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 32536509 - 32536464
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaa 105  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||||    
T  32536509 aacgaaatgcacaatcaaaaattattttagaatttcaatacattaa 32536464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 7672410 - 7672334
Alignment:
Q  82 tattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattattatct 158  Q
    ||||||| ||||| |||||||||||||| |||  | |||  ||||||||||||| || |||||||||| ||||||||    
T  7672410 tattttagaattttaatacattaaaagattattataactatttattacacattcaaggaccaaaatgactattatct 7672334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 30843819 - 30843910
Alignment:
Q  64 aagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattatta 155  Q
    ||||||||||||| | ||||||||  |||||  ||||||||| ||||||| || ||| || |||||||||||  |||||||| ||| |||||    
T  30843819 aagtgcacaatcagagactattttggaattttgatacattaagagactattgtgactactcattacacattcaggaaccaaagtgactatta 30843910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 39336789 - 39336839
Alignment:
Q  55 tgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaa 105  Q
    |||| |||||||| | |||||||||||||||||||||||| |||| |||||    
T  39336789 tgactaacgaagtccgcaatcaaaaactattttaaaattttaatatattaa 39336839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 20936486 - 20936523
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt 55  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  20936486 acaatattaatgaaacattttaatatcagaaactattt 20936523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 29079235 - 29079272
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt 55  Q
    |||||||||||||||||||||||||| | |||||||||    
T  29079235 acaatattaatgaaacattttaatattaggaactattt 29079272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 52330622 - 52330675
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaa 106  Q
    |||||| ||||| ||||| |||  || |||||||||||||||||||||||||||    
T  52330622 tttgaccaacgaggtgcataatttaagactattttaaaatttcaatacattaaa 52330675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 22235487 - 22235539
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaa 105  Q
    |||||| ||| || |||||||||||||| |||||| ||||||| |||||||||    
T  22235487 tttgactaacaaattgcacaatcaaaaattattttgaaatttcgatacattaa 22235539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 40124402 - 40124264
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggt 116  Q
    ||||||||||||||  | |||||| | ||| ||||||| ||| |||| |||||||||||| | || ||||||||||||| |||||||||  |||||| ||    
T  40124402 acaatattaatgaagtactttaatgttatggactattttgactaacggagtgcacaatcagagaccattttaaaatttcgatacattaatggactattgt 40124303  T
Q  117 cactgcttattacacattcgagaaccaaaatgattatta 155  Q
     ||| ||  |||||||||| || |||||| ||| |||||    
T  40124302 gactactcgttacacattcaaggaccaaagtgactatta 40124264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 12676519 - 12676427
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaaga 109  Q
    ||||||||||| |||||||||||  |||  || ||||| ||| ||| ||||||||||||| | |||||||||| ||||| |||||||||||||    
T  12676519 acaatattaataaaacattttaacgtcagaaattattttgactaactaagtgcacaatcatagactattttaacatttcgatacattaaaaga 12676427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 19206506 - 19206566
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||| ||| ||||||| ||||| |||||||||||||||||  |||||||||| ||||||    
T  19206506 tttgactaacaaagtgcataatcagaaactattttaaaattttgatacattaaaggactat 19206566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 6686836 - 6686797
Alignment:
Q  55 tgacaaacgaagtgcacaatcaaaaactattttaaaattt 94  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  6686836 tgactaacaaagtgcacaatcaaaaactattttaaaattt 6686797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 6788492 - 6788550
Alignment:
Q  55 tgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||| ||| ||||||||||||| |||||||||||||||||  ||||||| || ||||||    
T  6788492 tgactaacaaagtgcacaatcagaaactattttaaaattttgatacattgaatgactat 6788550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 7165761 - 7165831
Alignment:
Q  64 aagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacatt 134  Q
    ||||||| ||||| | ||||||||||||||| |||||||| ||||||||| || ||| ||  |||||||||    
T  7165761 aagtgcaaaatcagagactattttaaaattttaatacattgaaagactattgtgactactcgttacacatt 7165831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 20966220 - 20966261
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaattt 94  Q
    |||||| ||| ||||||||||||||| |||||||||||||||    
T  20966220 tttgactaacaaagtgcacaatcaaagactattttaaaattt 20966261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 1517626 - 1517582
Alignment:
Q  69 cacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||| |||||||||||||||| ||||||| || ||||||    
T  1517626 cacaatcaaagactattttaaaatttcgatacattgaaggactat 1517582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 18858055 - 18858011
Alignment:
Q  69 cacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||| || ||||||||||||||| ||| |||||||||||||    
T  18858055 cacaatcataatctattttaaaatttcgatatattaaaagactat 18858011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 18903185 - 18903233
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    |||||||||||| ||||||||||| |||||| ||||||| || ||||||    
T  18903185 agtgcacaatcagaaactattttagaatttcgatacattgaatgactat 18903233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 29488745 - 29488709
Alignment:
Q  67 tgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    ||||||||||||||||||||||||||||  |||||||    
T  29488745 tgcacaatcaaaaactattttaaaattttgatacatt 29488709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 9307432 - 9307517
Alignment:
Q  18 acaatattaatgaaacattttaatatcatgaactatttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    ||||| ||||||||  |||||||| ||| | ||||||||||||| ||| |||||| |||   ||||||||||||||||||||||||    
T  9307432 acaatgttaatgaattattttaatgtcagggactatttgacaaatgaaatgcacattcagggactattttaaaatttcaatacatt 9307517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 9307325 - 9307250
Alignment:
Q  60 aacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattc 135  Q
    ||||||||||| ||| |||||||||||||||||||  ||||||| | |||||||  |||||  |||||||||||||    
T  9307325 aacgaagtgcataataaaaaactattttaaaattttgatacatttagagactattatcactatttattacacattc 9307250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 31315298 - 31315343
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaaagac 110  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||    
T  31315298 agtgcacaatcaaagactattttaaaattttaatacattaagagac 31315343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 25085089 - 25085141
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaa 105  Q
    |||||| ||| ||||||||||||||||| |||||||||||||  |||||||||    
T  25085089 tttgactaacaaagtgcacaatcaaaaagtattttaaaattttgatacattaa 25085141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 9762629 - 9762668
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacatta 104  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  9762629 agtgcacaatcaaaaactattttaaaattttgatacatta 9762668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 4964258 - 4964351
Alignment:
Q  20 aatattaatgaaacattttaatatcatgaacta-tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagacta 112  Q
    |||||||||||| |||||||||||||  ||||| |||||| ||  ||||||| ||| |   ||||||||||||||| |||||||| || |||||    
T  4964258 aatattaatgaagcattttaatatcaaaaactattttgactaataaagtgcataattattgactattttaaaattttaatacattgaaggacta 4964351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 30000001 - 30000038
Alignment:
Q  70 acaatcaaaaactattttaaaatttcaatacattaaaa 107  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  30000001 acaatcaaaaactattttaaaattttaataccttaaaa 30000038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 31804009 - 31803956
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaa 106  Q
    |||||| |||||| || ||||||||||| |||||||||||||  ||||||||||    
T  31804009 tttgactaacgaaatgaacaatcaaaaattattttaaaattttgatacattaaa 31803956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 28995539 - 28995595
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaaga 109  Q
    |||||| ||||||||  | ||||||| | ||||||||||||||||||| ||||||||    
T  28995539 tttgactaacgaagtaaataatcaaatattattttaaaatttcaatacgttaaaaga 28995595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 81397 - 81349
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaataca 101  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  81397 tttgactaacgaagtgcacaatcataaactattttgaaatttcaataca 81349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 23159165 - 23159081
Alignment:
Q  20 aatattaatgaaacattttaatatcatgaactatttg-acaaacgaagtgcacaatcaaaaactattttaaaatttcaatacatt 103  Q
    |||||||||||||||||| || |||| | |||||||  || |||||| |||||||||||| |||||||||||||||  |||||||    
T  23159165 aatattaatgaaacatttcaacatcagggactatttttactaacgaaatgcacaatcaaatactattttaaaattttgatacatt 23159081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 42932887 - 42932827
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactat 113  Q
    ||||||||| ||||| |||||| | |||||||||||||||||| ||||||||||| |||||    
T  42932887 tttgacaaatgaagtacacaatgagaaactattttaaaatttcgatacattaaaaaactat 42932827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 296546 - 296591
Alignment:
Q  64 aagtgcacaatcaaaaactattttaaaatttcaatacattaaaaga 109  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||    
T  296546 aagtgcacaatcaaaacttattttaaaatttcaatgcattaaaaga 296591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 3599881 - 3599845
Alignment:
Q  69 cacaatcaaaaactattttaaaatttcaatacattaa 105  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3599881 cacaatcaaacactattttaaaatttcaatacattaa 3599845  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 13200852 - 13200891
Alignment:
Q  67 tgcacaatcaaaaactattttaaaatttcaatacattaaa 106  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  13200852 tgcacaatcaaaaaatattttaaaatttcactacattaaa 13200891  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 8206297 - 8206379
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattc 135  Q
    |||||| || |||||||||| |||   |||||| ||||||||| |||||||||| ||||||  | ||| ||||||||||||||    
T  8206297 tttgactaatgaagtgcacattcagggactattataaaatttcgatacattaaaggactatcatgactacttattacacattc 8206379  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 37269117 - 37269159
Alignment:
Q  70 acaatcaaaaactattttaaaatttcaatacattaaaagacta 112  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||    
T  37269117 acaatcaaaaactatttttaaatttcaatacatttaaaaacta 37269159  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 9577129 - 9577097
Alignment:
Q  80 actattttaaaatttcaatacattaaaagacta 112  Q
    |||||||||||||||| ||||||||||||||||    
T  9577129 actattttaaaatttcgatacattaaaagacta 9577097  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 14461750 - 14461822
Alignment:
Q  28 tgaaacattttaatatcatgaactattt-gacaaacgaagtgcacaatcaaaaactattttaaaatttcaata 99  Q
    |||| ||||||||||||  | ||||||| ||| ||||||||| ||||||| | ||||||||||||||| ||||    
T  14461750 tgaagcattttaatatcggggactattttgactaacgaagtgtacaatcagagactattttaaaatttgaata 14461822  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 19342534 - 19342566
Alignment:
Q  67 tgcacaatcaaaaactattttaaaatttcaata 99  Q
    |||||||||||||||||||||||||||| ||||    
T  19342534 tgcacaatcaaaaactattttaaaattttaata 19342566  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 26675287 - 26675375
Alignment:
Q  67 tgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattatta 155  Q
    |||||||||||| ||||||||| ||| |  ||||||||||||| ||| || | |  | ||||||||||| ||||||||| ||| |||||    
T  26675287 tgcacaatcaaagactattttagaatattgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgactatta 26675375  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 26946895 - 26946983
Alignment:
Q  67 tgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaaatgattatta 155  Q
    |||||||||||| ||||||||| ||| |  ||||||||||||| ||| || | |  | ||||||||||| ||||||||| ||| |||||    
T  26946895 tgcacaatcaaagactattttagaatattgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgactatta 26946983  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 27001402 - 27001482
Alignment:
Q  65 agtgcacaatcaaaaactattttaaaatttcaatacattaaaagactatggtcactgcttattacacattcgagaaccaaa 145  Q
    |||||||||||| | |||||||||||||||  ||| ||  | ||||||| || ||| || ||||||||||| |||||||||    
T  27001402 agtgcacaatcagagactattttaaaattttgatatatcgagagactattgtgactactcattacacattcaagaaccaaa 27001482  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 42525287 - 42525231
Alignment:
Q  53 tttgacaaacgaagtgcacaatcaaaaactattttaaaatttcaatacattaaaaga 109  Q
    |||||| || ||||| |||||||||||| ||||||||||||   |||||||||||||    
T  42525287 tttgactaatgaagtccacaatcaaaaattattttaaaattatgatacattaaaaga 42525231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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