View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17309_low_35 (Length: 235)
Name: NF17309_low_35
Description: NF17309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17309_low_35 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 28898134 - 28897905
Alignment:
| Q |
6 |
atcaaactctagttgtcaaaccctatatccagcaaaatgtagcttgcctcaaccaagtaacactatatctgcttctgttggtgtagattgcagaaatctg |
105 |
Q |
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| T |
28898134 |
atcaaactctagttgtcaaaccctatatccagcaaaatgtagcttgcctcaaccaagtaacactatatctgcttctgttggtgtagattgcagaaatctg |
28898035 |
T |
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| Q |
106 |
agtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgttgctgatcttgttaaggagactgtcaatgatgttattattttaagtg |
205 |
Q |
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| T |
28898034 |
agtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgttgctgatcttgttaaggcgactgtcaatgatgttattattttaagtg |
28897935 |
T |
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| Q |
206 |
acagcgatgaagaggatgtgaatattaaaa |
235 |
Q |
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| T |
28897934 |
acagcgatgaagaggatgtgaatattaaaa |
28897905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 39 - 234
Target Start/End: Complemental strand, 28931170 - 28930975
Alignment:
| Q |
39 |
aaaatgtagcttgcctcaaccaagtaacactatatctgcttctgttggtgtagattgcagaaatctgagtactaacatggatgccaatcagacagtaaag |
138 |
Q |
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| T |
28931170 |
aaaatgtggcttgcctcaaccaagtaacactatatctgcttcttatgatgtagattgcagaaatctgaatactaacatggatgccaatcagacagtaaag |
28931071 |
T |
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| Q |
139 |
gaaaggcgaagccctgctgttgctgatcttgttaaggagactgtcaatgatgttattattttaagtgacagcgatgaagaggatgtgaatattaaa |
234 |
Q |
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| T |
28931070 |
gaaattcaaagcgttatggttgctgatcctgttaagccgactgtcaatgattttattgtgttaagtgacagtgatgaagaggatgttaatattaaa |
28930975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 28922135 - 28921910
Alignment:
| Q |
6 |
atcaaactctagttgtcaaaccctatatccagcaaaatgtagcttgcctcaaccaagtaacactatatctgcttctgttggtgtagattgcagaaatctg |
105 |
Q |
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||||||||||| |||||| ||| || | |||| ||||||| ||||||||||| |||||||||||||||||||||||| || |||| |||||||||||||| |
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| T |
28922135 |
atcaaactctaattgtcagaccttaaacccagaaaaatgtggcttgcctcaatcaagtaacactatatctgcttctgatgatgtaaattgcagaaatctg |
28922036 |
T |
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| Q |
106 |
agtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgttgctgatcttgttaaggagactgtcaatgatgttattattttaagtg |
205 |
Q |
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| T |
28922035 |
agtactgacatggatgccaatcatgcagtaaaggaaaggcgaagcgcttcggttgctgatcccgttaaggtgatcgtcaatgatgctacagtgttaagtg |
28921936 |
T |
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| Q |
206 |
acagcgatgaagaggatgtgaatatt |
231 |
Q |
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| T |
28921935 |
acagtgatgaagaggatgtgagtatt |
28921910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 28912636 - 28912411
Alignment:
| Q |
6 |
atcaaactctagttgtcaaaccctatatccagcaaaatgtagcttgcctcaaccaagtaacactatatctgcttctgttggtgtagattgcagaaatctg |
105 |
Q |
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| T |
28912636 |
atcaaactctaattgtcagaccttaaacccaaaaaaatgtggcttgcctcaaccaagta---ctacatctgcttctgaggatgtagattgcagaaatctg |
28912540 |
T |
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| Q |
106 |
agtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgttgctgatcttgttaaggagactgtcaatgatgttattattttaagtg |
205 |
Q |
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| T |
28912539 |
agtattaacatggatgccaatcatacagtaaaggaaaggcgaagcgttactgtttcagatcccgttaaggcaatcatcaatgatgttattgttttaagtg |
28912440 |
T |
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| Q |
206 |
acagcgatgaagaggatgtgaatattaaa |
234 |
Q |
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| T |
28912439 |
acagtgatgaagaggatgtgaatagtaaa |
28912411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 28888417 - 28888258
Alignment:
| Q |
59 |
caagtaacactatatctgcttctgttggtgtagattgcagaaatctgagtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgt |
158 |
Q |
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||||||| |||||| |||||||| || |||||||||||||||||| || |||| |||||||| |||| ||||||||||||||| |||| | || |
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| T |
28888417 |
caagtaatgctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatcaaacagtaaaggaaaggaaaagcgttatggt |
28888318 |
T |
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| Q |
159 |
tgctgatcttgttaaggagactgtcaatgatgttattattttaagtgacagcgatgaaga |
218 |
Q |
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| T |
28888317 |
tgcggatcctgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaaga |
28888258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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